PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10693.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 240aa    MW: 26049.8 Da    PI: 6.3892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10693.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126890123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  mrna10693.1-v1.0-hybrid 68 YTCTFCRREFRSAQALGGHMNVH 90
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.14E-66595No hitNo description
SMARTSM003550.00666890IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-56891IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAKLSLLSLT QLQKLAPSSA QNPQSNSRSI WMWNPKQAQD QEDDSWEVRA FAEDTGNVMG  60
TTWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLHQV QHPSSISINP SAISSSSSSF  120
IIPTQEFLAA NGGLCLLYQF SDPNNGAFTT SAVTAPTAPL LNNIVESSSV PSSLLAPNPL  180
HDYLMTSSPS TLVGPHGASN SRNNSHCQDA KRSANEDQPS RSGVEDIEEL DLELRLGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136390229superman protein
2l1o_A2e-136390229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10693.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301688.11e-177PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2P6P9Z41e-139A0A2P6P9Z4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004301688.11e-176(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-35C2H2 family protein