PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09921.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 366aa    MW: 41943.3 Da    PI: 6.938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09921.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011197220123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              ++C++C+ksF+    L +H+ + H
  mrna09921.1-v1.0-hybrid 197 WQCGYCKKSFRAEKFLDQHLDNrH 220
                              58*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.802.1E-1943125IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514455.21E-1747116IPR017853Glycoside hydrolase superfamily
PfamPF002325.5E-1551125IPR001360Glycoside hydrolase family 1
PROSITE profilePS501578.6197220IPR007087Zinc finger, C2H2
PROSITE patternPS000280199220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MECSPTWLRV SQRIICVIVL ISYFLQAAVD AHEGLHANAS DPEELNLKWT DFPNDFVFGV  60
ATSAAQIEGS AKEFGKGPSV WDKIVDEVPD KIMDRSTMST SIDSYKRYKD SEIFAASSWP  120
HYLFSYVRTL LQEEEHAHEV HCSRERSRAA WKIIEEYLMP FVKKERYEIS TKCRLHPDND  180
LFRDQERHKI HLDINEWQCG YCKKSFRAEK FLDQHLDNRH YNLLNVSGSK CLADLCGALH  240
CDTVMNTQSS KKKCNPAATA RNHHLCEGLA NSCFPSDQGP SAHRLNELFL HQFCHSHTCS  300
EKQKPFSRGG QRDEKGNPRA QAHTKSWAKK ETLIVGNEMW HQNAATDNKF QISILEDPDL  360
TLPFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wq4_A8e-1314110997Beta-primeverosidase
3wq4_B8e-1314110997Beta-primeverosidase
3wq5_A8e-1314110997Beta-primeverosidase
3wq5_B8e-1314110997Beta-primeverosidase
3wq6_A8e-1314110997beta-primeverosidase
3wq6_B8e-1314110997beta-primeverosidase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09921.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464213.11e-139PREDICTED: uncharacterized protein LOC101303998
RefseqXP_011464214.11e-139PREDICTED: uncharacterized protein LOC101303998
TrEMBLA0A2P6P5771e-128A0A2P6P577_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004299191.11e-151(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-91C2H2-like zinc finger protein