PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09904.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 510aa    MW: 56171.8 Da    PI: 4.9419
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09904.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-12168190426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              e C+f+++tG Ck+G++CkF+H+
  mrna09904.1-v1.0-hybrid 168 EDCSFYLKTGSCKFGSNCKFNHP 190
                              78********************9 PP
2zf-CCCH25.72e-08218242327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              + +C++++r G CkyG+ C+++Hg+
  mrna09904.1-v1.0-hybrid 218 QTECKYYLRPGGCKYGNGCRYIHGK 242
                              568********************96 PP
3zf-CCCH40.44.9e-13263287226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++++rtG CkyG++Ck++H+
  mrna09904.1-v1.0-hybrid 263 GERECPYYMRTGSCKYGSNCKYNHP 287
                              789*********************9 PP
4zf-CCCH291.8e-09395421127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++lC+ff+rtG Ck+ ++Ck++H++
  mrna09904.1-v1.0-hybrid 395 PGQPLCSFFLRTGDCKFKSNCKYHHPK 421
                              589**********************96 PP
5zf-CCCH34.63.3e-11442466226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++ +C +++r+G+Ck+G+ CkF H+
  mrna09904.1-v1.0-hybrid 442 GQNICTHYSRYGICKFGPACKFDHP 466
                              6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-6162192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568164192IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6164191IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10168190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5170189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68215243IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032215242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6218244IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6219242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5221242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957261289IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6261288IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-11263287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6264288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5267286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112394422IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5394421IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7396421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5397423IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4399421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6438466IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915440468IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6440467IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8442466IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNLSESSSSV VSISSNLDSD TVNNNEIDQV LLSDSDIGSQ HSTAAEREED RHCSCGDGDV  60
PAVVRSGPDP DAVDLDHAVS DEIQKLDLKG EVAVEEVVEE EKKEVVEEEK KEEVEAEKSC  120
NGGEIEDKSS ERQSEEESNE GGENGVEVEK KGGEYNRWYQ YPVRLEAEDC SFYLKTGSCK  180
FGSNCKFNHP VRRKSNNQSQ VFKDKVKEGN ELSEKPSQTE CKYYLRPGGC KYGNGCRYIH  240
GKGKTPVAPV EELNFLGLPI RQGERECPYY MRTGSCKYGS NCKYNHPDPT AAGGSDPPSG  300
FGNSGPASLQ GGSQSSSWSA PRSLNETPPY VPMMMPPSQG VPSRNTEWNG YQAPVYLERS  360
MPAPPPYVIN NSGIETNMYK QYPQSNQVDE FPERPGQPLC SFFLRTGDCK FKSNCKYHHP  420
KSQTAVSPSF ALSDKGLPLR PGQNICTHYS RYGICKFGPA CKFDHPLHLT SSTTSGLDHQ  480
LPFSDLANTN EAARSRSRTD DTIQLQQAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09904.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299182.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-125C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A314UUB50.0A0A314UUB5_PRUYE; Zinc finger CCCH domain-containing protein 43 isoform X1
STRINGXP_004299182.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-117C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]