PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09798.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 324aa MW: 35403.5 Da PI: 6.9445

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09798.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H mrna09798.1-v1.0-hybrid 143 YECKTCNRCFSSFQALGGHRASH 165 99**********99999998887 PP
2	zf-C2H2	11.1	0.0012	226	248	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F + L H+r+H mrna09798.1-v1.0-hybrid 226 HECSVCGAEFASGQALGGHMRRH 248 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.63E-9	142	165	No hit	No description
Pfam	PF13912	1.4E-10	142	167	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.21	143	165	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.45	143	170	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	145	165	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.63E-9	221	248	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.3E-4	221	248	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.3E-12	225	249	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	226	248	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.598	226	248	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	228	248	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEAANLEEDQ SQMMIIKGKR TKRPRQSSPI VLTTTASSSS SPGGGGDDVE DHHHHHQSGM 60 MSTPIRVSDQ DDETTASPAT SAELTEMSTT EEEEDMANCL ILLAQSGQTQ IQKVQEQQLL 120 LLQQQQPIKA VAAADTAPGL YVYECKTCNR CFSSFQALGG HRASHKKPKV ISNVTNTTQA 180 QPKKALSFME DQDEYDRRFN NNTTSTTLSL QVSNRVFGNS KGTKVHECSV CGAEFASGQA 240 LGGHMRRHRT FINTTTTAPA APTMSSPQSH QASNKRPRSV LELDLNLPAP EEERLDITKL 300 PFSSSKKEQV IVFSASPLVR CHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09798.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306266.2	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A2P6RB51	0.0	A0A2P6RB51_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004306266.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-44	C2H2 family protein

Link Out ? help Back to Top
Phytozome	mrna09798.1-v1.0-hybrid