PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09733.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 867aa    MW: 95701.3 Da    PI: 7.0581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09733.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23284385199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
  mrna09733.1-v1.0-hybrid 284 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDS 367
                              89****************************996555555..89******************************************* PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   + +++ l+v+++r+
  mrna09733.1-v1.0-hybrid 368 IVFL--RAENGDLCVGIRRA 385
                              ****..4488999****996 PP
2Auxin_resp116.52.2e-38453536183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  mrna09733.1-v1.0-hybrid 453 AATLASNGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVSDPMRWPESPWRLLQ 536
                              6899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37276388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-29277387IPR015300DNA-binding pseudobarrel domain
CDDcd100178.59E-21283384No hitNo description
SMARTSM010191.7E-21284386IPR003340B3 DNA binding domain
PfamPF023621.2E-21284385IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112284386IPR003340B3 DNA binding domain
PfamPF065073.8E-33453536IPR010525Auxin response factor
PROSITE profilePS5174520.735780860IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MLGLVQTPEK ERTATTTTVA EGVKDSFNFS HGDCVDEPRS IVLLLDLATT RPWKKPTTSS  60
PTRRPSPRRI IPSLQLGEFL PDFSDDGPPS SGWSRPAEWF SERFSSLEEK FGGLWTGSVS  120
WKYETEGFEI LIVSLPVKEH LVRARREGNL QILITLKKKK DFEMITFMDA KEKLKEGEKC  180
LDPQLWHACA GGMVQMPLVN AKVFYFPQGH AEHACGPVDF RNYPRVPPYI LCRVSAIKFM  240
ADPETDEVYA KIRLVPLSSS EAGYEDNGIG GINGADSQDK PASFAKTLTQ SDANNGGGFS  300
VPRYCAETIF PRLDYSADPP VQTILAKDVH GETWKFRHIY RGTPRRHLLT TGWSTFVNHK  360
KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGPESSSGWN PAGGNCAMPY GGFSSYLRED  420
EGKVMRNGNG NASNSNGSLM GKGKVGPESV LEAATLASNG QPFEVVYYPR ASTPEFCVKA  480
SLVKAALQIR WCPGMRFKMA FETEDSSRIS WFMGTISSVQ VSDPMRWPES PWRLLQVSWD  540
EPDLLQNVKR VSPWLVELVS NMPAIHLTPF SPPRKKMRLP QHPDFPFEGQ LPMPTFSGNH  600
HLLGTSSPFG CLPDKTPAGM QGARHAHYGL SLSDIHLNKL QSGLFPAGFP PLDHVATPTK  660
FSNNTMIQRP TMSENVSCLL TMSHSPQSTK KSEDVKPPQL MLFGKPILTE QQISLSSSGD  720
TVSPVVTGNS SSDGSGDKMA NHSENSGSAL HQQSVQERSS GEGFHWYKDT RHEAEANLET  780
GHCKVFMESE DVGRTLDFSQ FKSYDELYTK LADMFGIENS ETLNHVLYRD ATGAVKHIGD  840
EPFSDFVKTA RRLTILMDSG SNNVGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-8118155751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09733.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304436.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P6RAT80.0A0A2P6RAT8_ROSCH; Auxin response factor
STRINGXP_004304436.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]