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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna09702.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 41626.2 Da PI: 8.6652 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.3 | 3.6e-50 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+GfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp k+ +++ewyfF++rd+ky++g+r+nra+ gyWkat mrna09702.1-v1.0-hybrid 16 LPAGFRFHPSDEELIVHYLKNKVTSSPLPA-TIITELDLYKYNPWELPPKALFGKEEWYFFTPRDRKYPNGTRPNRAAGLGYWKAT 100 799***************************.89**************966667899****************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk+++s+ +++ +g+kk Lvfy+g+ pkg+kt+W+m+eyrl mrna09702.1-v1.0-hybrid 101 GTDKHIFSScGTKSIGVKKALVFYTGHPPKGVKTEWIMNEYRL 143 ********988889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-59 | 11 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.704 | 16 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAEMEQTAIE NHNLQLPAGF RFHPSDEELI VHYLKNKVTS SPLPATIITE LDLYKYNPWE 60 LPPKALFGKE EWYFFTPRDR KYPNGTRPNR AAGLGYWKAT GTDKHIFSSC GTKSIGVKKA 120 LVFYTGHPPK GVKTEWIMNE YRLLDTTIWS TTSKQKGSMR LDHWVLCRVR QKCNNMRNIW 180 EDQNITPSYK LSGNFRQVVD EPCSKEASPS IEMVRSYLYK DYPMLPYMFA SQKVLPTIKT 240 TSSISFQDTT NGNEKSCSPT PVYHEANSNK INNGGQLLVS SLDSLINPLK RKTEGNDHPQ 300 RRCSVAPSKK ICNRDYQMEE VSNGSMMNPW GLDNQLGADN LNVDQWSSII QYQELSQLIG 360 FPCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-64 | 4 | 181 | 3 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna09702.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306241.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A498K1W0 | 0.0 | A0A498K1W0_MALDO; Uncharacterized protein | ||||
STRING | XP_004306241.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-77 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | mrna09702.1-v1.0-hybrid |