PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09106.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 1105aa MW: 123935 Da PI: 6.8302

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09106.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53822	2.25E-46	182	547	IPR028082	Periplasmic binding protein-like I
Gene3D	G3DSA:3.40.50.2300	3.4E-10	184	304	No hit	No description
CDD	cd06366	1.85E-78	186	556	No hit	No description
Pfam	PF01094	5.6E-34	202	535	IPR001828	Receptor, ligand binding region
Gene3D	G3DSA:3.40.50.2300	1.3E-15	306	462	No hit	No description
Gene3D	G3DSA:3.40.50.2300	3.4E-10	463	520	No hit	No description
SuperFamily	SSF53850	5.92E-26	573	717	No hit	No description
SuperFamily	SSF53822	2.25E-46	579	590	IPR028082	Periplasmic binding protein-like I
Gene3D	G3DSA:3.40.190.10	1.0E-21	595	706	No hit	No description
CDD	cd13686	2.99E-77	597	833	No hit	No description
SMART	SM00079	7.4E-6	600	835	IPR001320	Ionotropic glutamate receptor
Pfam	PF00497	1.1E-9	623	732	IPR001638	Solute-binding protein family 3/N-terminal domain of MltF
SuperFamily	SSF53850	5.92E-26	747	826	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane
GO:0004970	Molecular Function	ionotropic glutamate receptor activity

Sequence ? help Back to Top
Protein Sequence Length: 1105 aa Download sequence Send to blast
MREYCDTDSW AKLYTLKLGD NINAVEPISM GVVGISTVMM VIEDMSRYWG NVFRIGHEGD 60 KHDLFKGMPA AKNRLYMKRV CLVLVIKLWI GRDRRPSRSI PEELPIIAFS NFESFFGSFL 120 KSFKIPRSIK PMIIFSYDSQ KEYQAKKLRK VMSWGLLVSL LLVSSSLING RGDRCQKRQQ 180 HRDATIGAVV DFTSRVGKEQ RIAMDLAIQD LLHPSCLTVN LDLRDSQGRS AKSTSAASNL 240 LNDKKVEAII GTLTMQEAAV ASEIEIRNGN FTILSLISTA IKPSPASLQL PNYLQVANDI 300 VIHIQCLAAL VGHFQWRKVT ALYEQNTDFS SNSGMITLLS DSLKLVNSEI EHHQAFPPLS 360 FLPDPDAFFD EELKKLRSKS NRVFIVTQFS LDSAVFLFRK AKEMGMMGKG YVWIVTDEIA 420 SLLDSVDTSI KYNMQGVIGI KTNFIETTKN FAKFKTRFRR LYGLQYPEEE ENSSPSIFAL 480 RTYDTVHAIA LAMKNAASNY LSQEILSTKF QGLSGMMEFK NGMLSQSPTF QIINVYGRSY 540 SEIAFWSPRF GFSDSMNKHL DMKERTNHSF VQVLGPINWP GGLQAPPKGW TLVDEERPLK 600 IGIPARGAFN QFVKVTYDQN TNQTRITGFS IDMFEAAVKN LPYHMPYVFI PFNGSYDELV 660 EQVYYKGLDA AVGDIEVIAD RYHYVEFSQP YISSGLEMVV PAGIGSMVTS DSTSSGHFHS 720 EPLFHDDYLS SPAICARCGN TEERNGTVGC NGNSFIVRYL IDVLEFRPEN IKRISSISDY 780 PKAFESGEIQ AAFFVAPHAK VFPKGSPLAI DMSKAIVEIN EKKQVELLER QMLSSFNCSP 840 SLNSNDGPIG YEPFSGLFLI SGLVLIDWQA MKVGKTWCLG FILFVSSNVL DYYAVAVGSS 900 VFWFNCLCSV KTFPCPEECN AEDFDTKDKL LQHIRLFHTS PDAPKCCYLC GKMFEEHNEV 960 NEENGVNEEN AVNAGNEVNA VNADQGLIHI VSLTDSQKNI NPRSQAMCYV VNLQSFTSLH 1020 DWIVSMFGNP NILTETNPHL ATHVVYLLWT IWKHRCDCVF NNTKPNPIAV SSNAFAASSE 1080 FLAVPPNLQP PKHSTTTPRI WTKP*

Sequence ? help Back to Top

Protein Sequence Length: 1105 aa Download sequence Send to blast

MREYCDTDSW AKLYTLKLGD NINAVEPISM GVVGISTVMM VIEDMSRYWG NVFRIGHEGD  60
KHDLFKGMPA AKNRLYMKRV CLVLVIKLWI GRDRRPSRSI PEELPIIAFS NFESFFGSFL  120
KSFKIPRSIK PMIIFSYDSQ KEYQAKKLRK VMSWGLLVSL LLVSSSLING RGDRCQKRQQ  180
HRDATIGAVV DFTSRVGKEQ RIAMDLAIQD LLHPSCLTVN LDLRDSQGRS AKSTSAASNL  240
LNDKKVEAII GTLTMQEAAV ASEIEIRNGN FTILSLISTA IKPSPASLQL PNYLQVANDI  300
VIHIQCLAAL VGHFQWRKVT ALYEQNTDFS SNSGMITLLS DSLKLVNSEI EHHQAFPPLS  360
FLPDPDAFFD EELKKLRSKS NRVFIVTQFS LDSAVFLFRK AKEMGMMGKG YVWIVTDEIA  420
SLLDSVDTSI KYNMQGVIGI KTNFIETTKN FAKFKTRFRR LYGLQYPEEE ENSSPSIFAL  480
RTYDTVHAIA LAMKNAASNY LSQEILSTKF QGLSGMMEFK NGMLSQSPTF QIINVYGRSY  540
SEIAFWSPRF GFSDSMNKHL DMKERTNHSF VQVLGPINWP GGLQAPPKGW TLVDEERPLK  600
IGIPARGAFN QFVKVTYDQN TNQTRITGFS IDMFEAAVKN LPYHMPYVFI PFNGSYDELV  660
EQVYYKGLDA AVGDIEVIAD RYHYVEFSQP YISSGLEMVV PAGIGSMVTS DSTSSGHFHS  720
EPLFHDDYLS SPAICARCGN TEERNGTVGC NGNSFIVRYL IDVLEFRPEN IKRISSISDY  780
PKAFESGEIQ AAFFVAPHAK VFPKGSPLAI DMSKAIVEIN EKKQVELLER QMLSSFNCSP  840
SLNSNDGPIG YEPFSGLFLI SGLVLIDWQA MKVGKTWCLG FILFVSSNVL DYYAVAVGSS  900
VFWFNCLCSV KTFPCPEECN AEDFDTKDKL LQHIRLFHTS PDAPKCCYLC GKMFEEHNEV  960
NEENGVNEEN AVNAGNEVNA VNADQGLIHI VSLTDSQKNI NPRSQAMCYV VNLQSFTSLH  1020
DWIVSMFGNP NILTETNPHL ATHVVYLLWT IWKHRCDCVF NNTKPNPIAV SSNAFAASSE  1080
FLAVPPNLQP PKHSTTTPRI WTKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09106.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024167932.1	0.0	glutamate receptor 2.7-like isoform X2
TrEMBL	A0A2P6Q0I9	0.0	A0A2P6Q0I9_ROSCH; Glutamate receptor
STRING	XP_004292814.1	0.0	(Fragaria vesca)

Link Out ? help Back to Top
Phytozome	mrna09106.1-v1.0-hybrid