PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08922.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 324aa    MW: 36072.4 Da    PI: 6.8401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08922.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018260282123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kCp C+k F +   L  H r+H
  mrna08922.1-v1.0-hybrid 260 FKCPFCSKIFGSGQALGGHKRSH 282
                              89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.014431IPR007087Zinc finger, C2H2
SMARTSM003550.11426IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-6428IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM00355120221241IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.09E-5222282No hitNo description
SMARTSM003550.034260282IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-10260284IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055260287IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKHQCKLCS RFFNNGRALG GHMKAHMAVL PLPPKTHQQL APAESTHSAS SFSSSSEDEQ  60
QKGSHQPEEE DQKGLAYGLR ENPKKSFRLA DPEFSFQVDA GSVVIQDRES ETESRNPTRR  120
RSKRNRKMSF TENLEMKKPK LTTSTVDSPP AEPEPLSSVS DTSPEEDVAM CLMMLSRDVW  180
MGANYGEADQ EQNGKEVVVA VKDEEFEQLE EIKLKKTRGK NRCDKCSKLF RSHQAMCVHR  240
KICFQSEEEA NNAASSASLF KCPFCSKIFG SGQALGGHKR SHLSGTSGYS KVVTKVKEVR  300
ESFIDLNMPA PQEEDDFSVV SDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08922.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299433.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLA0A2P6P8G10.0A0A2P6P8G1_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004299433.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-39C2H2-like zinc finger protein