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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08838.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27654.6 Da PI: 4.7538 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.2e-19 | 64 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g mrna08838.1-v1.0-hybrid 64 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 114 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-13 | 64 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 65 | 123 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.42 | 65 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-32 | 65 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-35 | 65 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.17E-32 | 66 | 124 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSCTTETQLG SETDSSSTSS SPPSSPASSR PLNPDNKPES LELQPKNNND KKSKRARVDS 60 SKHPVYRGVR MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN 120 FPELIDSLPR PASLAPRDVQ AAASKAAQMH QFDSTNPSLS STSSSSSLSS LVSAIDNLST 180 ESEELSEIVE LPSLGTSYES YELRSEFVFV DSADDEWVYP PPWLQQMGDC GVYVCGGLGS 240 SANSTGFEGL LWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 60 | 123 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08838.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291182.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 7e-72 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A3S8T925 | 0.0 | A0A3S8T925_FRAAN; Transcription factor ERF25 | ||||
STRING | XP_004291182.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-72 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna08838.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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