PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna08512.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 432aa MW: 46719.7 Da PI: 9.5994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna08512.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	189	211	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg+ F+ ++L+ H++ H mrna08512.1-v1.0-hybrid 189 SCPHCGEIFPKLESLELHQSIrH 211 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	188	211	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.76E-24	213	427	No hit	No description
Gene3D	G3DSA:3.90.228.10	9.8E-13	221	427	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MALLTFQPEA TEPKKKKKHV QPQQQPPSKR SHHKQHSSSK KQQPPPQKPP STSSWDHFKN 60 LLTCKQIEGS RVHDPSKNAV GYSKLGSSCG SICSFKDVVH GNTTSRVVHR ADNSPDSSSL 120 GQETGLLSRK VASRSESGSA SRSNRGGGAG YTSSNSSRGM QFRKLSGCYE CHYIVDPSRY 180 PVPRSTICSC PHCGEIFPKL ESLELHQSIR HAVSELGVED SGRNIVEIIF KSSWLKKDSP 240 ICRIERILKV QNTQRTIQRF EDCRDAVKNR ALNSARKNPR CAADGNELLR FHCTSISCPL 300 GARGSTNLCG SVPGCGVCTT IRHGFQGHGG GEVVGSKGVR TTASSGRAHD SLHCTDGRRA 360 MLVCRVIAGR VRRVAEDAAE EEGVTASSSA GGTYDSVAGY AGVFSNLEEL VVFNPRAILP 420 CFVVIYKALD S*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MALLTFQPEA TEPKKKKKHV QPQQQPPSKR SHHKQHSSSK KQQPPPQKPP STSSWDHFKN  60
LLTCKQIEGS RVHDPSKNAV GYSKLGSSCG SICSFKDVVH GNTTSRVVHR ADNSPDSSSL  120
GQETGLLSRK VASRSESGSA SRSNRGGGAG YTSSNSSRGM QFRKLSGCYE CHYIVDPSRY  180
PVPRSTICSC PHCGEIFPKL ESLELHQSIR HAVSELGVED SGRNIVEIIF KSSWLKKDSP  240
ICRIERILKV QNTQRTIQRF EDCRDAVKNR ALNSARKNPR CAADGNELLR FHCTSISCPL  300
GARGSTNLCG SVPGCGVCTT IRHGFQGHGG GEVVGSKGVR TTASSGRAHD SLHCTDGRRA  360
MLVCRVIAGR VRRVAEDAAE EEGVTASSSA GGTYDSVAGY AGVFSNLEEL VVFNPRAILP  420
CFVVIYKALD S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna08512.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291366.1	0.0	PREDICTED: uncharacterized protein LOC101308537
TrEMBL	A0A2P6PZ32	0.0	A0A2P6PZ32_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004291366.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10341	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-159	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	mrna08512.1-v1.0-hybrid