PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08511.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family E2F/DP
Protein Properties Length: 853aa    MW: 94793.5 Da    PI: 6.4653
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08511.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.23.8e-25589654171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r+++sL+llt+kf++ll+ +++++++ln++ak L   +v  ++RRiYDi+NVLe++nl+ k +kn++rwkg
  mrna08511.1-v1.0-hybrid 589 RYDSSLGLLTKKFVRLLQDTKDRTLDLNKAAKVL---EV--QKRRIYDITNVLEGINLLVKVSKNHVRWKG 654
                              6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF041892.1E-5522277IPR017423tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Gene3DG3DSA:1.10.10.102.7E-26586654IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-15589652IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-31589654IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.2E-23591654IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146605.14E-36663770No hitNo description
SuperFamilySSF1440749.68E-23665769No hitNo description
PfamPF164211.6E-21668767IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030488Biological ProcesstRNA methylation
GO:0005667Cellular Componenttranscription factor complex
GO:0031515Cellular ComponenttRNA (m1A) methyltransferase complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MSENKVHGDA VENPRVTWDG CSVLLDINDG DRLVFSRLSG GAKLKIGNKN CSLQPLIGCP  60
FGSFFRVENG EDGPYLSRYT PSNEGNSVQE QGDCESKDEL RDNRALVDNN KAQSLTGDAI  120
NEMRRQGATG DEIVEALIAN SATFEKKTVF SQEKYRLKKQ KKYAPIVLLR RPFTRSICEA  180
YLKKYPVRIG FLRMDTLCLL LSMANVSANS DVLVVDMVGG LLTGAVAERL GGTGYVCNTY  240
PGGSPYPMDI ARIFNFGEEI CKRIVRSPLT DLLLSIQTEK PKLSSQNGDS CSMETESNEQ  300
ISSTVGTEEV TLASENMTSD LIVDTTNSVE RKPSKSAKLG EKAPHDIISM WKENGFSSLI  360
IAAPELDTWS LVKEILPLLS NSAPFAIYHQ YLQPLATCMH NLQVGKMAVG LQISEPWLRE  420
YQVLPSRTHP CMQMNGFGGL SDMEDPSRLP RPAQFQYHLL HPHSLQTPSS SLPSNPRRVR  480
RFTPPPDHQD SKPQGVSDKA LTSRADAYAA FSKLELGKIK EEPDNCEAQT CGQATAAEQK  540
NVLNAPVSTI PKSWTGVQKF TKSKVAKLIK SEAVNMESQN GMAPVTSCRY DSSLGLLTKK  600
FVRLLQDTKD RTLDLNKAAK VLEVQKRRIY DITNVLEGIN LLVKVSKNHV RWKGHVVPVE  660
LDDHVSRLKE EVESLSAEEC RLNDAIRKKR ELIRTVKEDR NNKKYLFLKE GDILSLPCFQ  720
NQTLIAIKAP HASTIEVLDP DEDIDFPQGQ YRMTVRSATG QIDCYLLSDY QSQQQGITVK  780
QENSTSSSPC SNTGYCRMED GGMSPEFHSL PDTEPEASSG MQKIVLSHLN ANDDYWFRSE  840
PEVSLTDLWA TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ccb_B2e-462743420446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5ccx_B2e-462743420446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5cd1_B2e-462743420446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5cd1_E2e-462743420446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08511.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291368.10.0PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6
TrEMBLA0A498JBD50.0A0A498JBD5_MALDO; Uncharacterized protein
STRINGXP_004291368.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.19e-80E2F/DP family protein