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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08241.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 23412.3 Da PI: 5.2831 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H mrna08241.1-v1.0-hybrid 35 YECVFCKRGFTTAQALGGHMNIH 57 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.57E-6 | 33 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 33 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MESQSSHRHH EEDSKSSSDE EAEDLNDDLG TGRSYECVFC KRGFTTAQAL GGHMNIHRKE 60 RAKPRPTSAP SSIASKAADE HVSDLMRSHR SLQSYPSPHF ATDPEVNVNY RTYIPAPMWI 120 VGQAHSDHEL CARNYPVRHH QNLFATDDDC RNWRSGSSLS LGIGPSADDD DDDEDHLGLD 180 HHKKEIERSN GACSSEGDGL DLELRLGHDP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08241.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292195.1 | 1e-155 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A2P6PVF7 | 1e-131 | A0A2P6PVF7_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004292195.1 | 1e-154 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 6e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna08241.1-v1.0-hybrid |