PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08175.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 659aa MW: 73611.4 Da PI: 7.0361 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.9 | 6.4e-29 | 85 | 168 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e gf+rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdql+ mrna08175.1-v1.0-hybrid 85 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLQ 168 8********************************************************************975544..6******98 PP | |||||||
2 | trihelix | 101.6 | 6.1e-32 | 476 | 560 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+ Li++r++++++++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+ mrna08175.1-v1.0-hybrid 476 RWPRVEVHSLIKLRTSLDSKYQENGPKGPLWEEISAGMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHLLD 560 8*********************************************************************8.99*********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.0E-4 | 82 | 144 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.829 | 84 | 142 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.1E-18 | 84 | 170 | No hit | No description |
CDD | cd12203 | 7.80E-23 | 84 | 149 | No hit | No description |
PROSITE profile | PS50090 | 6.934 | 469 | 533 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.26 | 473 | 535 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.04E-29 | 475 | 540 | No hit | No description |
Pfam | PF13837 | 4.6E-22 | 475 | 562 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MSDQLSMIKV KRDRERGYPM LGDLGSSSDA TTATATAVKP FGAHEGGGGD GGVGSNSGEE 60 EKNSYSRGGG GGGDDFGDRS FGGNRWPRQE TLALLKIRSD MDVAFRDASV KGPLWDEVSR 120 KLAELGFHRS AKKCKEKFEN VYKYHRRTKE GRTGKSEGKT YRFFDQLQAL ENQPPTPTTP 180 NSTTTHQPRP QPTIAMAVSN PPPLPTISHI NSTSTNSTNT VPSAAPHQGI ATPTIPSSLF 240 PPTNPITFTP PPQPPPQQNP TSHHQHHQAT TFVPPSTFPS ISSTDLMSNS TSSSTSSDEE 300 MEGRAKRKRK WKDFFETLMK QVVYKQEDLQ KRFLEAIEKR EHERMAREEA WRMQEMARIN 360 REREILAQER SIAAAKDSAV MSFLQKIAEQ QHNPQATPTI TPNNHLVTSH PPQPHPPPAQ 420 QPAPPPQRQQ TTPPPPALQI TQAPITSFEI TPRANGESNN DNNNMVSATT TPSSSRWPRV 480 EVHSLIKLRT SLDSKYQENG PKGPLWEEIS AGMKKLGYNR SAKRCKEKWE NINKYFKKVK 540 ESNKKRPEDS KTCPYFHLLD SLYKERNNKY FDQMGNNNNN NDNNNSPKPE NNAAPMMVRP 600 EQQWQPPRVE PEMDQNHEEE ERDGDEDEDE DDEEDEGNYE IVANKGASVS VGASATAE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08175.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290520.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2H4NFX1 | 0.0 | A0A2H4NFX1_FRAAN; Trihelix transcription factor GT-2B | ||||
STRING | XP_004290520.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 7e-95 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna08175.1-v1.0-hybrid |