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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
mrna08173.1-v1.0-hybrid |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
Trihelix |
Protein Properties |
Length: 579aa MW: 65763 Da PI: 6.6494 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
mrna08173.1-v1.0-hybrid | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 92.8 | 3.4e-29 | 63 | 147 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+k+ e g++rs+k+Ckek+en+ k+++++keg++++ ++ +t+++fd+le
mrna08173.1-v1.0-hybrid 63 RWPRQETLALLKIRSQMDPAFRDSSLKAPLWEDVSRKLGELGYQRSAKKCKEKFENVYKYHRRTKEGRSGK--PEGKTYRFFDELE 146
8********************************************************************95..55568******98 PP
trihelix 87 a 87
a
mrna08173.1-v1.0-hybrid 147 A 147
5 PP
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2 | trihelix | 102.6 | 2.9e-32 | 415 | 500 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k ev+aLi++r++++ +++++ k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+qle
mrna08173.1-v1.0-hybrid 415 RWPKTEVQALIDLRTSLDVKYQDAGPKGSLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFHQLE 499
8********************************************************************97.99***********8 PP
trihelix 87 a 87
a
mrna08173.1-v1.0-hybrid 500 A 500
5 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 579 aa
Download sequence Send
to blast |
MMVAEEPAVL LHDEGGCSNT ETAAVLFSNS GAEDHDKHTF GDVDQEGGHD DDHRSYGGGG 60 GNRWPRQETL ALLKIRSQMD PAFRDSSLKA PLWEDVSRKL GELGYQRSAK KCKEKFENVY 120 KYHRRTKEGR SGKPEGKTYR FFDELEAFDH QQNSHNLSII PPKPPVVLWT NNSNHHPNQS 180 VPPPVVTVPQ NGVTPATDPI IHSSTNNSLL PQQIHSSQDN TNGFRLLNPT TNLFSSSTSS 240 TTASDEEFQQ RNKRKRKWKY FFRRLTKQVL EKQERLQENF LEAIAKCDQE RMVKEEAWRM 300 QEMARIDRDH EVLVQERSSA AAKDAALIQF LQKVSLQHNS NDTRSLEIND ATAMLVIPPP 360 TNVPRPPLPA LPVSWAIDQR GLTASSDGAV APRNLEAKKV YGNGENNSAV MGSSRWPKTE 420 VQALIDLRTS LDVKYQDAGP KGSLWEEISA GMRRLGYNRS SKRCKEKWEN INKYFKKVKE 480 SSKTRPEDSK TCPYFHQLEA LYRNKNNNKI EYHKDRSVEK LQIVQQPLRE NVDPNQEEDE 540 HDDHGDQDGE STEEDQEHDQ IGGTVTSYKQ SSMEMVES*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |