PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna07740.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 414aa MW: 45498.2 Da PI: 8.6085

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna07740.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	84	106	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C C+ksF+++ L +H+++ H mrna07740.1-v1.0-hybrid 84 SCYVCNKSFPSSQFLYSHMMRsH 106 69******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.517	83	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.7E-6	84	106	No hit	No description
Pfam	PF13912	0.0021	85	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.7E-6	301	325	No hit	No description
Pfam	PF13912	6.4E-9	306	327	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MKSFPAKQMP DYVRDRIHNN NGRPLGSYHN VRVYSQQRPH SYLLPKKIIS KFNPPKQQHQ 60 QRYHYPPSNP SNLKAGISSS TSSSCYVCNK SFPSSQFLYS HMMRSHPERG MKGVLPPQQA 120 APMTMSVIPS QSQTSQNERG MNGVLPPQQA PMMKSVVPSQ LSQSSNERGI NSVLQPPRAP 180 ISPMKSVDVP SQSGHGSPSA SDSSDVTEPD YCDPVKLLSS SWGKKDRRGR TNNPCATCAS 240 NAAIARLQKP NETMEAIKSS SSIPSTSNTL IPDQQNPNLS SSSTTDNEIS LIDHKMMKMT 300 MMTKKYKCNV CNKEFDTGQA LGGHKSSSAC KAVRETKLLA PAAHDYHGPQ IVGVSTTKKT 360 MADVEVSCTK KTMDDDIEEG EIVEDGEITD EEGIQRISHK IFDFDLNELP PEE*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MKSFPAKQMP DYVRDRIHNN NGRPLGSYHN VRVYSQQRPH SYLLPKKIIS KFNPPKQQHQ  60
QRYHYPPSNP SNLKAGISSS TSSSCYVCNK SFPSSQFLYS HMMRSHPERG MKGVLPPQQA  120
APMTMSVIPS QSQTSQNERG MNGVLPPQQA PMMKSVVPSQ LSQSSNERGI NSVLQPPRAP  180
ISPMKSVDVP SQSGHGSPSA SDSSDVTEPD YCDPVKLLSS SWGKKDRRGR TNNPCATCAS  240
NAAIARLQKP NETMEAIKSS SSIPSTSNTL IPDQQNPNLS SSSTTDNEIS LIDHKMMKMT  300
MMTKKYKCNV CNKEFDTGQA LGGHKSSSAC KAVRETKLLA PAAHDYHGPQ IVGVSTTKKT  360
MADVEVSCTK KTMDDDIEEG EIVEDGEITD EEGIQRISHK IFDFDLNELP PEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna07740.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011457362.1	0.0	PREDICTED: uncharacterized protein LOC105349412

Link Out ? help Back to Top
Phytozome	mrna07740.1-v1.0-hybrid