PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna07429.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRF | ||||||||
Protein Properties | Length: 367aa MW: 41762.1 Da PI: 8.8948 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.4 | 3.3e-25 | 81 | 125 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ mrna07429.1-v1.0-hybrid 81 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 125 79****************************************997 PP | |||||||
2 | QLQ | 56 | 1.2e-19 | 16 | 46 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTa+Q+q+L++Q+l++Ky+++++PvP +L+ mrna07429.1-v1.0-hybrid 16 PFTATQWQELEHQALIFKYMVSGVPVPTDLV 46 9****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.5E-9 | 15 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-14 | 16 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.749 | 16 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.479 | 81 | 125 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-21 | 82 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MMSGGSPSSA RNFRYPFTAT QWQELEHQAL IFKYMVSGVP VPTDLVYSFK RRLDSSMSSR 60 LFPHHPFGWG CYDMGFGRKI DPEPGRCRRT DGKKWRCSKE AYPDSKYCER HMHRGRNRSR 120 KPVEASSSSS TTNTTPNSDT IPTPPDYNPA SIHKNLSKTS PSMFSSSFSN ETPQTQHQSS 180 SLYPFLSRPQ GSNTNPQLFL NSGSYVNEAD HRDYRYLQGT KEGVDHELAF FPAESSENAR 240 SFMSSYKGYS SQSQFQSLTE HYPQQQSQDE QHCYVLGTDF KSSRPMKIEN KEADQTQKSL 300 HHFFGDWPPK STDTWLDLAP NSRLHRAPKP SPEKLTPNLR SFSASNHFTV DDRIGGCGWW 360 GRDDSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna07429.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303687.1 | 0.0 | PREDICTED: growth-regulating factor 5-like | ||||
TrEMBL | A0A2P6RYM6 | 0.0 | A0A2P6RYM6_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family | ||||
STRING | XP_004303687.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-62 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna07429.1-v1.0-hybrid |