PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06448.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 367aa    MW: 40526.7 Da    PI: 9.517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06448.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08203250455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  mrna06448.1-v1.0-hybrid 203 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 250
                              8*************************9....55599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-10197254No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16199264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGEAVYGIGR VKATLKLSSP LLSTPLISSR MMVRRKAAST MRIMLPLAAG TPNSTNTNNL  60
HFSQSHYPSE PLVEQMNIPG DQSARVAESS SCIDQSSAKI ATFSDNEPSV TKKQSPESSS  120
VVDKLETGEQ VTQKVTTPIE RKRRTRNCSS PSSAQSKVKK QKKAEEEKKS KAEKKEQKKA  180
VQEVEPPTGY IHVRARRGQA TDSHSLAERV RREKISERMK MLQRLVPGCD KVTGRAVMLD  240
EIINYVQSLQ NQVEFLSMKL ASVNPMFYEF GPDLGDLMVK QEASPFSTGP QCSPTQPTNF  300
ADTSTTAATT TFTAATNNYP FLDSLLHQSP RPTAFHQDNE SLLWDGEDQR QSFLNPSGFN  360
NLCSFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140161RKRRTRNCSSPSSAQSKVKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06448.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408783e-74EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298536.20.0PREDICTED: transcription factor bHLH137
TrEMBLA0A2P6P4N10.0A0A2P6P4N1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004298536.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-55bHLH family protein