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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna06434.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ARF | ||||||||
Protein Properties | Length: 823aa MW: 91100.9 Da PI: 6.548 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.2e-24 | 167 | 268 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD + mrna06434.1-v1.0-hybrid 167 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAF 251 99****************************963.3334459********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F + +++el+v+v+r+ mrna06434.1-v1.0-hybrid 252 IFL--RGENGELRVGVRRA 268 ***..449999*****996 PP | |||||||
2 | Auxin_resp | 119.5 | 2.6e-39 | 293 | 375 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt++g++d+dp rW++SkWrsLk mrna06434.1-v1.0-hybrid 293 AWHAIKTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEDADPARWRESKWRSLK 375 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-40 | 163 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-41 | 163 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-21 | 165 | 267 | No hit | No description |
Pfam | PF02362 | 1.1E-21 | 167 | 268 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-22 | 167 | 269 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 167 | 269 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-36 | 293 | 375 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.0E-12 | 688 | 791 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.67E-11 | 704 | 783 | No hit | No description |
PROSITE profile | PS51745 | 23.655 | 706 | 790 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 823 aa Download sequence Send to blast |
MTSSEVSIKD NGGNQRGGGG GGERESFSSS FSDHNDGRNA GEGQNGHSAV PAAGRDAETA 60 LYTELWHACA GPLVTVPREG ERVFYFPQGH IEQVEASTNQ VADQQMPVYD LPPKILCRVI 120 NVQLKAEPDT DEVFAQVTLL PEPNQDESAV EKITPPLPPP RFQVHSFCKT LTASDTSTHG 180 GFSVLRRHAD ECLPQLDMSR QPPTQELVAK DLHGNEWRFR HIFRGQPRRH LLQSGWSVFV 240 SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QQGNVPSSVI SSHSMHLGVL ATAWHAIKTG 300 TMFTVYYKPR TSPAEFIVPF DQYMESVKNN YSIGMRFKMR FEGEEAPEQR FTGTIIGIED 360 ADPARWRESK WRSLKPALAP PALNPLPMPR PKRPRPNMVP SSPDSSVLTR EGSLKVTVDP 420 VLQGGGYSRV LQGQEFSTLR GNFVESESDT AQKSTARPAT IDDNSISGSK RYGSGTDNWM 480 PSGRHEPTYT DLLSGFGTNS DSHGICQPFV DQAVASSNSM RKHSLDQEGK FNLSSWSMLP 540 SSLSLSLDSN LKGPIVNASY QAQQNVRYGG LNDYSVHHGQ RVEQTQGNWL MPPPPPPPSH 600 FDQANVREVM PKHISLLKHE AVKPKDISCK LFGIPLITHE PSTNRTAMNE SAYHNQALTL 660 ESDQKLEVSR GLKSVDNLSA VNESDKQISQ QHTRDGQGKA QGSSTRSCTK VQKQGIALGR 720 SVDLTKFHNY DELIAELDQL FEFNGELMDP KKNWLLVYTD DENDMMLVGD DPWQEFCGIV 780 RKIFIYTREE VQKMNPGTLT SLGEENPALP AEGVDAREGK SQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-165 | 60 | 396 | 18 | 349 | Auxin response factor 1 |
4ldw_A | 1e-165 | 60 | 396 | 18 | 349 | Auxin response factor 1 |
4ldw_B | 1e-165 | 60 | 396 | 18 | 349 | Auxin response factor 1 |
4ldx_A | 1e-165 | 60 | 396 | 18 | 349 | Auxin response factor 1 |
4ldx_B | 1e-165 | 60 | 396 | 18 | 349 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 391 | 395 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna06434.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297494.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A2P6P4P4 | 0.0 | A0A2P6P4P4_ROSCH; Auxin response factor | ||||
STRING | XP_004297494.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna06434.1-v1.0-hybrid |