PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06414.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 361aa    MW: 40946.5 Da    PI: 5.3162
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06414.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.72.8e-2239135186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                              rWt++e+l+Lie+++ +e+ ++ +k             +p+W+ +s+++r+rg++r+p+qC+++w+nl  ++kki+++e++ + e+
  mrna06414.1-v1.0-hybrid  39 RWTRHETLVLIEGKKVIENGIQFQKgrrsiaalgkdPVEPKWDLISSFCRQRGMSRGPVQCRKRWSNLLVDFKKIRNWESQIKGEA 124
                              8******************9998766677888887788********************************************9999 PP

                 trihelix  76 sstcpyfdqle 86 
                              +s +++ ++l+
  mrna06414.1-v1.0-hybrid 125 ESFWVMRNDLR 135
                              99999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-632108IPR009057Homeodomain-like
PROSITE profilePS500906.94632107IPR017877Myb-like domain
PfamPF138373.1E-1038130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASNSSKHEE GGSPSDQVEK SQVPSGSSEE RTKTIRHPRW TRHETLVLIE GKKVIENGIQ  60
FQKGRRSIAA LGKDPVEPKW DLISSFCRQR GMSRGPVQCR KRWSNLLVDF KKIRNWESQI  120
KGEAESFWVM RNDLRRDKKL PGFFDREVYD VLDGKDVTAT PAFPLAVIYP VPLNSMPMED  180
ASHETMEAAA EEEEEEQEEE DAEEEEPEKF FNSIRNDSTE DGLFSDFEES GQEETAINSK  240
KEQKVTESPT KTSTTPVSTP GPVKGKRGLG SDTRRGCVSQ EKQKQRRLSR DGCEDNCTDQ  300
LIRVMERNSK MMTAQLEAHN KNSQLEREQN KEHNNNLLTA IKNVTDALVR IADKLSTEKS  360
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06414.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298526.10.0PREDICTED: uncharacterized protein LOC101311089
TrEMBLA0A2P6P4M10.0A0A2P6P4M1_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004298526.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-58Trihelix family protein