PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna06301.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 158aa MW: 18275.1 Da PI: 10.0529 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.8 | 1.7e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krien + rqvtfskRr+ ilKKA+ELSvLCd+eva+i+fs++ k mrna06301.1-v1.0-hybrid 9 KRIENPISRQVTFSKRRTSILKKAFELSVLCDTEVALIVFSPSSK 53 79***************************************9876 PP | |||||||
2 | K-box | 43.7 | 1.2e-15 | 89 | 145 | 12 | 68 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 + ++ ++ e + L++ ++nL+ ++++l G +L+ L ++eL+qLe+qL+++l++iRs+ mrna06301.1-v1.0-hybrid 89 TMEQLWRYETEELRRLTQNLEMKLKNLAGAELSILGMQELKQLERQLKTGLERIRSR 145 45688999***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.034 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-29 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.18E-32 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 1.1E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-22 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.3E-11 | 89 | 146 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.216 | 91 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MGRGKVELKR IENPISRQVT FSKRRTSILK KAFELSVLCD TEVALIVFSP SSKPDLYASH 60 DINRTIAMYR SQVGLHQSSN PACSTRITTM EQLWRYETEE LRRLTQNLEM KLKNLAGAEL 120 SILGMQELKQ LERQLKTGLE RIRSRMKFYD LANEDFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-19 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 7e-19 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 7e-19 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 7e-19 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna06301.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297587.1 | 1e-104 | PREDICTED: MADS-box transcription factor 23-like isoform X3 | ||||
Refseq | XP_011463249.1 | 1e-104 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_011463250.1 | 1e-104 | PREDICTED: MADS-box transcription factor 23-like isoform X2 | ||||
TrEMBL | A0A498I4L6 | 3e-65 | A0A498I4L6_MALDO; Uncharacterized protein | ||||
STRING | XP_004297587.1 | 1e-103 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 5e-39 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna06301.1-v1.0-hybrid |