 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
mrna05610.1-v1.0-hybrid |
Organism |
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Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
bHLH |
Protein Properties |
Length: 377aa MW: 41910 Da PI: 6.5997 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
mrna05610.1-v1.0-hybrid | genome | GDR | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.5 | 4.3e-12 | 161 | 207 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq
mrna05610.1-v1.0-hybrid 161 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKQLQ 207
58899**********************.....9******************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MEDPTFLNQY EMNFHLDYSL EDLNFRSLSA ESYSSYPDFT PPQNDVDERP AKQPKNNHSN 60 WNSCTTTHDH KTTVPRASSS ASSHLISFDN SNSSAYGSLD CTTTVKPKNE VQGSGGNLNS 120 IPTLISQGNS YDPQTCSPNR AYGQGIKRAA TVTRSPLHAQ DHVLAERKRR EKLSQRFIAL 180 SALVPGLKKM DKASVLGDAI KYVKQLQERM KILEEQAAKK TVESVVFVKR TQYSADDDIS 240 SSDENFDSCS DQPLPEIEAR VSDKEVLIRI HCEKKKGCLA NILHEIERLN LTILNSSFLP 300 FGNSTLDITV VSQMDVEYSM TVKELVRSKA LYTSLSCTNA EKTTLPAEQW YTAMAGFLLQ 360 GFVYVGGGFF PSFLRG*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 161 | 216 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 165 | 170 | ERKRRE |
2 | 166 | 171 | RKRREK |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |