PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05564.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23009 Da PI: 6.5203 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 14 | 62 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +i+ s rqvtfskRr+g+ KA+ Sv Cda+vavi+fs+t klyey mrna05564.1-v1.0-hybrid 14 KIQHLSSRQVTFSKRRKGLVNKAYDFSVRCDAKVAVIVFSNTKKLYEYF 62 6778899*****************************************6 PP | |||||||
2 | K-box | 32 | 5.4e-12 | 91 | 151 | 9 | 69 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++ + sl+ +a +++ei+ L +l+G +L+ +sl+eL++Le+q+ ++++++ +kK mrna05564.1-v1.0-hybrid 91 EPSSSSDSLSAIAAVMQEEIKALNLDRSRLKGMELDGMSLRELHELEKQIREGIESVEKKK 151 556667888999999*********999*******************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-22 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-18 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-22 | 8 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.175 | 8 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-20 | 14 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-18 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-18 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.3E-7 | 95 | 151 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.038 | 96 | 203 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAMTTCPRRT KIEKIQHLSS RQVTFSKRRK GLVNKAYDFS VRCDAKVAVI VFSNTKKLYE 60 YFSSPSMERY MKERACGSVM ESAEKKSQHG EPSSSSDSLS AIAAVMQEEI KALNLDRSRL 120 KGMELDGMSL RELHELEKQI REGIESVEKK KIDERAVYML EDSDSDRVDG NYSNFFSGTS 180 SSAVSDCIES ELSEQFIDTC LHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05564.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289389.1 | 1e-148 | PREDICTED: agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A2P6RPL2 | 3e-86 | A0A2P6RPL2_ROSCH; Putative transcription factor MADS-MIKC family | ||||
STRING | XP_004289389.1 | 1e-147 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 6e-26 | AGAMOUS-like 18 |
Link Out ? help Back to Top | |
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Phytozome | mrna05564.1-v1.0-hybrid |