PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05027.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 31407.7 Da    PI: 7.5329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05027.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.3e-26958150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             k+ien s rqvtfskRr g++KKA EL vLCdaevaviifs+tgklye s
  mrna05027.1-v1.0-hybrid  9 KKIENLSSRQVTFSKRRGGLFKKAGELAVLCDAEVAVIIFSQTGKLYEQS 58
                             68*********************************************965 PP
2K-box241.7e-0910618620100
                    K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                              +++ ++++ie Lq e+ +++G++L+ Ls+++L +Le+q  ++   +++kK+e l e+ +++ k  +++ ++ ++L++++ee
  mrna05027.1-v1.0-hybrid 106 KFEAMQQKIEVLQLELCRMKGQKLDGLSINDLCELEKQQIEGELAVKNKKEEKLWEEKQKTMKEHEMAMQKIENLEREIEE 186
                              567899**********************************************99999988888888888888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-31175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.964161IPR002100Transcription factor, MADS-box
CDDcd002658.43E-41276No hitNo description
PRINTSPR004048.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.326100197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRGKIEIKK IENLSSRQVT FSKRRGGLFK KAGELAVLCD AEVAVIIFSQ TGKLYEQSST  60
SMEKILSRYH NFSNKQDVPQ LEYCLEELPH EFVKEELKFD SSALKKFEAM QQKIEVLQLE  120
LCRMKGQKLD GLSINDLCEL EKQQIEGELA VKNKKEEKLW EEKQKTMKEH EMAMQKIENL  180
EREIEELRKQ NHVHPSIIES HPPKKRLLYY TNSSKAISNC STASENESDE HSNTSLQLGF  240
NFSGCHRPSV GLNKRKEASN RPNSNDSGSQ VVSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20173173MEF2C
5f28_B1e-20173173MEF2C
5f28_C1e-20173173MEF2C
5f28_D1e-20173173MEF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05027.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296220.20.0PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A498I3962e-65A0A498I396_MALDO; Uncharacterized protein
STRINGXP_004296220.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-40AGAMOUS-like 71