PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04940.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 302aa    MW: 32842.6 Da    PI: 6.5133
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04940.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-19126180256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +k+ ++tkeq   Le+lF+ ++++++++++eLA+kl+L+ rqV vWFqNrRa+ k
  mrna04940.1-v1.0-hybrid 126 KKKLRLTKEQSLLLEDLFKDQHTLNTRQKQELAQKLNLSARQVEVWFQNRRARTK 180
                              788899***********************************************98 PP
2HD-ZIP_I/II113.11.7e-36126215191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq+ lLE+ F+ +++L++++K+ela++L+l++rqv+vWFqnrRARtk+kq+E+d+e+L++++++l+een+rL+kev+e
  mrna04940.1-v1.0-hybrid 126 KKKLRLTKEQSLLLEDLFKDQHTLNTRQKQELAQKLNLSARQVEVWFQNRRARTKLKQTEVDCEQLRKCCENLTEENKRLQKEVQE 211
                              59************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr +l
  mrna04940.1-v1.0-hybrid 212 LR-AL 215
                              *9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.7E-19197IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.4E-19103183IPR009057Homeodomain-like
SuperFamilySSF466891.3E-19112183IPR009057Homeodomain-like
PROSITE profilePS5007117.589122182IPR001356Homeobox domain
SMARTSM003891.9E-16124186IPR001356Homeobox domain
CDDcd000861.26E-15126183No hitNo description
PfamPF000467.9E-17126180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
CDDcd146860.00569175214No hitNo description
SMARTSM003404.2E-24182225IPR003106Leucine zipper, homeobox-associated
PfamPF021837.7E-10182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSDKNDELGL SLGLGLGYGA NRSSSFSSFH LNLMQNPPDT TLNLQRVFGF TDRNATSFRR  60
VIDVNQLPAA VGDFDDENGV SSPNSTVSSQ SGKRSERGDE NEAERTSCSL GGSDDEDGNG  120
GGDTSKKKLR LTKEQSLLLE DLFKDQHTLN TRQKQELAQK LNLSARQVEV WFQNRRARTK  180
LKQTEVDCEQ LRKCCENLTE ENKRLQKEVQ ELRALKLSPQ FYMQMNPPTT LTMCPSCQCV  240
AVSSSSAASS ATATTASSTV PVTGPTGNPG LPAIQMPVPI SPWATLPIPH HRPVDAPASQ  300
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130SKKKLRL
2174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04940.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306997.10.0PREDICTED: homeobox-leucine zipper protein HAT3 isoform X2
SwissprotP466025e-86HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2P6SF631e-145A0A2P6SF63_ROSCH; Putative transcription factor HD-ZIP family
STRINGXP_004306997.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3281622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-67homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]