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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04513.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 574aa MW: 61625.8 Da PI: 5.0773 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7.2e-09 | 366 | 414 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq mrna04513.1-v1.0-hybrid 366 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 414 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.41E-11 | 361 | 418 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-17 | 361 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 363 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 364 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-6 | 366 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 369 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MDMSEKEKFE LENRNEDPMS YSPSMSYGFG GSNLTNVSMG LVPSGNSLGD SKGDLIGSSS 60 QPSASMVESF SQVLWDHPTS SQNLGFCDIN GQTSASTSNT MGIRKGIPAS LRSGIDRPLD 120 MCWNPPNSML KGGIFLPNGP AGMLPQSLSQ FPADSGFIER AARFSCFNGG NFNDMMNPFV 180 VPESMSLYSK GGGMMQWAQE VVAGQGPKAM SSNELNQVGD TSNEVSVPID HGATDGSPLK 240 NEKKSESLVK SHDEVKNAVD GSGNESDEAD FSGGAEEPSM MEGAGVGPSK SSKKRKRNGQ 300 ANELDQTKTA AQQPGESTKD DTEMVHKGAS TTNKISGKLV KQGSQTSDPP KEDYIHVRAR 360 RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL 420 SMKLATVNPR LDLNIESLLE KDMLQSRVGP SSSMGFSPDM HIAYPPLHPS QSGLIQAGLP 480 GMGSTSDLLR RAMGSQMAPM TGGFKDPSQV PNVWEDELQN VFQMTYGTGT PSNSQDVDGS 540 NSCGHMTPLA WRILRNVAEA VDMLNNASYA AER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04513.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297184.2 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
TrEMBL | A0A2P6R269 | 0.0 | A0A2P6R269_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004297184.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7249 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-134 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna04513.1-v1.0-hybrid |