PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04320.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 536aa    MW: 59510.1 Da    PI: 7.8226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04320.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012729123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ Cg++F +   L  H+r+H
  mrna04320.1-v1.0-hybrid  7 HVCKLCGQRFVSGKVLGGHMRSH 29
                             79*******************99 PP
2zf-C2H2163.4e-0587107323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C+ Cgk F +k +L  H+r H
  mrna04320.1-v1.0-hybrid  87 CKVCGKAFESKNSLFGHMRHH 107
                              *******************99 PP
3zf-C2H215.35.7e-05117138223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              +C dCgk F +  +L +H r+H
  mrna04320.1-v1.0-hybrid 117 RCRDCGKGFESLKSLGVHRRVH 138
                              7*******************99 PP
4zf-C2H214.97.7e-05371393123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C +C ++Fs++  L  H+r+H
  mrna04320.1-v1.0-hybrid 371 HMCRICRRVFSSPQALGGHQRVH 393
                              68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-5535No hitNo description
PROSITE profilePS5015711.136734IPR007087Zinc finger, C2H2
SMARTSM003550.078729IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-7729IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SMARTSM003550.008685107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.55285112IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-886138No hitNo description
PfamPF139128.8E-687108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-587108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.177116143IPR007087Zinc finger, C2H2
SMARTSM003550.14116138IPR015880Zinc finger, C2H2-like
PfamPF139120.0026117138IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5118139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-7370393No hitNo description
SMARTSM003550.036371393IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-4371394IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533371398IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-7447474No hitNo description
PROSITE profilePS501578.642452479IPR007087Zinc finger, C2H2
SMARTSM003551452474IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-11452475IPR007087Zinc finger, C2H2
PROSITE patternPS000280454474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MERGKGHVCK LCGQRFVSGK VLGGHMRSHA FKNPIKEKRV HKKSHVGFQD EGANVGYGLR  60
LNPKRSWRFS GKEEEEEQEE EEVEILCKVC GKAFESKNSL FGHMRHHSVK QRSEAQRCRD  120
CGKGFESLKS LGVHRRVHTR RLKGVDEAER SLAQKLWIEN LEVVRRKRSA RFRYRIGSSP  180
SSSSFSGLNL NECGFGNGCG VDIEEAAFCL MMISRGLGNW GQISSVTESS NNNSFSVEVV  240
SPSQKKRFRD NEVGGFGCDG DSGSSQIKRA KVEMSADCVL DYENGSSVKA VSEFGDGFLS  300
DEMPKSGFVL YGIEELDVKM SEEVEVGLSG LGSMKFGLSK GAVLKACDSV NKVVCATESE  360
TFADSEKKRE HMCRICRRVF SSPQALGGHQ RVHKRDHKSS GLKNEDGEDR TQIGTFCETE  420
DKCNPAKLQC SYSSVEQEME TVTVGGSERK GHICGICLKV FPSGQALGGH KRSHYVKDSE  480
IATEETRVMK QQISDICDAF EVGHKLQEEN DGVEYKPWWT GTEQKHEMLV GLIPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04320.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306095.10.0PREDICTED: uncharacterized protein LOC101305788
TrEMBLA0A2P6S4220.0A0A2P6S422_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004306095.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-12zinc-finger protein 2