PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03970.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 573aa    MW: 64346.3 Da    PI: 6.4544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03970.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021261283123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC+ C+k+F++   L  H  +H
  mrna03970.1-v1.0-hybrid 261 YKCETCNKVFKSYQALGGHRASH 283
                              9************9999998887 PP
2zf-C2H210.70.0017322344123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp C ++Fs+   L  H r+H
  mrna03970.1-v1.0-hybrid 322 HECPVCFRVFSSGQALGGHKRSH 344
                              78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.2E-7327IPR007087Zinc finger, C2H2
SMARTSM003550.052426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-4247285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.699261288IPR007087Zinc finger, C2H2
SMARTSM003550.01261283IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.18E-7261283No hitNo description
PfamPF139122.0E-11261285IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SuperFamilySSF576679.18E-7317344No hitNo description
PfamPF139129.0E-11321344IPR007087Zinc finger, C2H2
SMARTSM003550.19322344IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245322349IPR007087Zinc finger, C2H2
PROSITE patternPS000280324344IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MERHKCKLCM RSFSNGRALG GHMRSHMMNL PIHQNPQGEE EDAPVHDQML IDEIDSVSAS  60
SSSDDEEGHG EEEEEDEEGL YYGLRENPKR SIRLVDPEFS FAVESGSVVL QDRESETESS  120
KNPTRRRSKR TRKSAMFDHL QHHDHQQLHN QYHHHHPKLN QHHQEAFNKI KLKNKIDSYA  180
NNNVEPEPVS SISDATTEED VAFCLMMLSR DKWKKQDKQQ QEEQDYQDED VEVEYRSLDE  240
SDESEEQLIK FQRTKSSRGK YKCETCNKVF KSYQALGGHR ASHKKIKAAS AANPNPNRIV  300
YKPEPDPEIN HNAGSSSFVK THECPVCFRV FSSGQALGGH KRSHVTGSAA INYTHHHTPS  360
MKSLAKLGDN MIDLNLPAPV DDDEMSQIEL SAVSDAEFSV SDTDVRTALR CGFPSVRHHT  420
APARVTSTPA DSSSFPDLFP SPASPPNSSF PARLTLFKIL GDLAGKLEFS GVVGDEKRSG  480
KLLESARVEA RPRRCSPVPY GKEPPAPETT KLPKSFYTTI TCGICHKKGH NRRSCERRNQ  540
QQVPDVNVEV PNENIEVPVD NNVETPTDPT TV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03970.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3926655e-37FQ392665.1 Vitis vinifera clone SS0AFA4YL24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306958.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A2P6SFP40.0A0A2P6SFP4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004306958.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-40C2H2-like zinc finger protein