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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
mrna03882.1-v1.0-hybrid |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family |
TCP |
| Protein Properties |
Length: 408aa MW: 45971.2 Da PI: 10.0898 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna03882.1-v1.0-hybrid | genome | GDR | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 135.8 | 3.6e-42 | 85 | 223 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec..eaesss 79
gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++ ai el ++ s++++ ++ e+++ +
mrna03882.1-v1.0-hybrid 85 SGKKDRHSKIYTAQGPRDRRMRLSVQIARKFFDLQDMLGFDKASKTIDWLFTKSRSAINELKQQlvlrtcSTINSLSTsaESNEVV 170
68**************************************************************9999874444322222222333 PP
TCP 80 ssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
s++ + + ++ s+ + +++++ + k sr +arararertr+k ri+ +
mrna03882.1-v1.0-hybrid 171 SQTMQ---DLKSDSSIGRMINPRKNIRRYRVGKGSRDQARARARERTRQKLRIRLS 223
33332...23334444444444444445899********************99865 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MTSTHDESSS SQPHHPHHDY NSSYFQDHDG VVLSYLLSQQ LDTDSSQSAD ISVAASNQGL 60
IMEEEKIQSS KKKRKAAAAP RKRSSGKKDR HSKIYTAQGP RDRRMRLSVQ IARKFFDLQD 120
MLGFDKASKT IDWLFTKSRS AINELKQQLV LRTCSTINSL STSAESNEVV SQTMQDLKSD 180
SSIGRMINPR KNIRRYRVGK GSRDQARARA RERTRQKLRI RLSCQANHDE ANPKDLGLLC 240
LGEEAEKHTN HELIEQGRTN SMMRNNADDH KTLMGRSISA RSRARFEDDG CEFPGFTGNW 300
GNKMQSIHPR KMTRNVTESF TGNNLLQVEN PSTPIMGLTS KYQEPSSTTT SRLSFSSSNS 360
QEQSYSGTYS NSCPINFMPN QDHNPNPIFI ATLISPDQNP GQFLKFN*
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