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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03879.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 372aa MW: 41128.2 Da PI: 7.3597 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 3.9e-13 | 162 | 234 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-.STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas....................kapskK.lsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ + ++++ +Ka+ L ++++++k+L mrna03879.1-v1.0-hybrid 162 KSHSEAERRRRERINNHLAKLRSLLPSTTkfcgssevrkkkkndkekkgNNGNVAgTDKASLLAEVIQHVKEL 234 79*************************777*****************9955555559************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 3.4E-6 | 13 | 96 | No hit | No description |
PROSITE profile | PS50888 | 14.157 | 159 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 162 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-11 | 163 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-13 | 163 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-11 | 165 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 6.6E-4 | 271 | 320 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MMCGKKEDQG ECSQTHHHQQ VQNYQEQLLL QQQQQMMQQQ QQNQNDLYGS RGLIFPHDQP 60 PPPILQPWTL PQIHAFNNNI DPFLVPPPAP SSSYASFFNR RGAPSLQFTY DGSASDHHHL 120 RILSEALGPM VQPGSAPFGL QAELGKLTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA 180 KLRSLLPSTT KFCGSSEVRK KKKNDKEKKG NNGNVAGTDK ASLLAEVIQH VKELKRQTSV 240 IAETSPVPTE TDELVVDDAS EEEGKFVIKA SLCCEDRSDL LPDLIKTLKA LRLRTLKAEI 300 TTLGGRVKNV LFITGEEDHS SSGEEQQQYC ISSIQEALKA VMEKSGGGEE SNSSGSVKRQ 360 RTTNNTNVSI L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03879.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297146.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Refseq | XP_011462943.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 1e-111 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A2P6R228 | 0.0 | A0A2P6R228_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004297146.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4589 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-85 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03879.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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