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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03833.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40588.4 Da PI: 7.8109 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.9 | 3.5e-52 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 + pGfrFhPtdeelv +yLk+k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkat mrna03833.1-v1.0-hybrid 15 MLPGFRFHPTDEELVGFYLKRKIQQRLLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKAT 99 579***************************.89***************9888999******************************* PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl mrna03833.1-v1.0-hybrid 100 GTDRPIYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 ********956677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-57 | 14 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.704 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 17 | 142 | IPR003441 | NAC domain |
PROSITE pattern | PS00485 | 0 | 341 | 347 | IPR006650 | Adenosine/AMP deaminase active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009168 | Biological Process | purine ribonucleoside monophosphate biosynthetic process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0019239 | Molecular Function | deaminase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGEKNDQMDK VDDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSIADSSP PKKLLDKSLP PNDAWAICRI FKKTNSMAQR 180 ALSQSWLSPL PEPTSSGFLT QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QHQQASTYSA 240 FALSNKPNFN PALVGENIPN GFMFTPIDMS SPPNFNHAFV GDLSNNNTSG SIDFDGSQQQ 300 QFSGFSTSLA QDQNQENTIT SLANNTNSHW GTIRSIGFPF SLGSDDPSDM STSYSTNKCY 360 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-54 | 1 | 176 | 1 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03833.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024184957.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 1e-103 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2P6S4M6 | 0.0 | A0A2P6S4M6_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004306150.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 2e-99 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03833.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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