PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Plant Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

mrna03816.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ZF-HD

Protein Properties

Length: 183aa MW: 20062.7 Da PI: 8.1027

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna03816.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.7	3.7e-30	114	168	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY eC+kNhAa +Gg+avDGC+Efm+s geeg +aal+CaACgCHRnFHRreve+ mrna03816.1-v1.0-hybrid 114 NVRYVECQKNHAAGVGGYAVDGCREFMAS-GEEG-TAALTCAACGCHRNFHRREVET 168 79************************9.6664.689**************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-15	111	177	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.0E-28	114	166	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-25	116	166	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.626	117	165	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009001	anatomy	fruit
PO:0007010	developmental stage	whole plant fruit ripening stage
PO:0007027	developmental stage	whole plant fruit formation stage 70% to final size

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MLSKWARWNY DGKEECSPKS MKGIDKLSGG GCHSPHKKLC HRDTPWKLSE DLPDMLYIGV 60 HGVRLSTTLG AGLPGALSES FLGTLRDPRT ERMIQVKRQV VVRREEPSSY TIRNVRYVEC 120 QKNHAAGVGG YAVDGCREFM ASGEEGTAAL TCAACGCHRN FHRREVETVC ECSSPTSTNE 180 AA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna03816.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-22	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	mrna03816.1-v1.0-hybrid