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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03748.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 24795.1 Da PI: 6.1404 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.6 | 6.7e-23 | 13 | 59 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +i+n rqvt+skRr g+lKKA ELSvLCd e +viifs tgkl e mrna03748.1-v1.0-hybrid 13 KIDNLPARQVTYSKRRRGLLKKARELSVLCDCEFSVIIFSATGKLCE 59 799999***************************************87 PP | |||||||
2 | K-box | 39.8 | 2e-14 | 116 | 177 | 30 | 91 |
K-box 30 nLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 L r +R++ GedLe L++ eLq+Le++++ sl+++ ++K+e ++ +i l k ++l++ n mrna03748.1-v1.0-hybrid 116 LLHRHNRQMNGEDLEGLNIDELQRLETKIDGSLNRVLQTKEENIIGEILALEAKIRMLSNGN 177 578999**************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.025 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-29 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-21 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.79E-31 | 7 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-25 | 7 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-19 | 13 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-21 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-21 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.37 | 86 | 191 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-11 | 116 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVKPASKKIK IEKIDNLPAR QVTYSKRRRG LLKKARELSV LCDCEFSVII FSATGKLCES 60 SSSSTKDVIT RYESQTGDEG NLDQSSLDLQ HDCIKLSNEI ADKSRVLRSN IWTVCLLHRH 120 NRQMNGEDLE GLNIDELQRL ETKIDGSLNR VLQTKEENII GEILALEAKI RMLSNGNGVA 180 FKSDISPAEE GLVSECDTYP SSCFSSGSSL DHVSGGDTLF LKLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 7 | 72 | 4 | 69 | MEF2C |
5f28_B | 2e-15 | 7 | 72 | 4 | 69 | MEF2C |
5f28_C | 2e-15 | 7 | 72 | 4 | 69 | MEF2C |
5f28_D | 2e-15 | 7 | 72 | 4 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03748.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT734623 | 1e-123 | KT734623.1 Fragaria x ananassa SVP1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464115.1 | 1e-151 | PREDICTED: MADS-box protein AGL24-like isoform X1 | ||||
Swissprot | Q9FVC1 | 2e-43 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A0X8MPC2 | 9e-99 | A0A0X8MPC2_FRAAN; SVP1 | ||||
STRING | XP_004299084.1 | 1e-134 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 7e-46 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03748.1-v1.0-hybrid |