![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna03650.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 764aa MW: 84005.9 Da PI: 6.8672 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.7 | 1.3e-10 | 642 | 667 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+y d C++aHg mrna03650.1-v1.0-hybrid 642 FKTELCNKWQETGDCPYKDHCQYAHG 667 79***********************9 PP | |||||||
2 | zf-CCCH | 17.2 | 9.3e-06 | 680 | 704 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H mrna03650.1-v1.0-hybrid 680 YKTEVCRMVLAGDVCPYGHRCHFRH 704 9**********55**********88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.816 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.66E-4 | 3 | 39 | No hit | No description |
PROSITE profile | PS51017 | 11.806 | 274 | 316 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.5E-8 | 274 | 311 | IPR010402 | CCT domain |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-16 | 638 | 674 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-9 | 638 | 673 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-7 | 641 | 668 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.051 | 641 | 669 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-8 | 642 | 667 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-8 | 675 | 708 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-11 | 675 | 708 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 679 | 706 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.821 | 679 | 707 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 764 aa Download sequence Send to blast |
MARICDFCST SSAAVHCKAD VAHLCLSCDS ELHSANQVVN RHPRTILCDS CNHLSAYDGC 60 LDHGGGGLMC HLCDRSHLVT TSPVHQRLSS SSYSYTGCPA AEDFAAIWGL QMNHDHISSA 120 SHVGSLDILG QILDLQRTQS TVPLGLCSNK TSQCPPSFTL HVDSDIEFSD KMQDQLRVSD 180 DDPHIPDDEY LAFLNLEELI GDEDDQDLIV KTQQLLDDPN LDTAAASKDG RTESSSLPAN 240 GSSCSLPSSV SCNTFSSSSM VSQGVKGEQV FDARANAMMR YKQKKHSRVY ERKIRYQRKK 300 AIADSRKRVR GGLKVTEMEM DVWGGQPPDG SKTAVEDWIG ERSFAMSRYD FNASEGKISA 360 EMIGNLFVFT VELKPRMQND VAYATASARI GTSAMSSPQP QPYGGGYNYG GAYSSSIFGP 420 KPSQSSSVGV GLYGVQSDSD TSQAYRNKLY QSLLVQNRQE MVNRHSLCLK RLHEAAEEAD 480 ALRRENSHLR NVNVELNKQL NLLIHASIQK EIEASSSSAA SQPRSPFGIV NGIRGLSIDG 540 KSSTHEEEDL SDYSPTSDVM DNEEAENVNV ERIALPKSIS VRSSGYVKLP PLSAATKAAA 600 RTRIAARSRT AKPVSASQKV YVQGGKKEEV PLELEVFNQG MFKTELCNKW QETGDCPYKD 660 HCQYAHGVKE LRPVIRHPRY KTEVCRMVLA GDVCPYGHRC HFRHALTEEE KQLAGGNNKL 720 NRPISHHQWG FLGYFVGNGD DEGGGGWRLA ATRRRELIAK TTY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-20 | 642 | 708 | 4 | 70 | Butyrate response factor 2 |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 282 | 298 | QKKHSRVYERKIRYQRK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna03650.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464074.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A2P6R1F8 | 0.0 | A0A2P6R1F8_ROSCH; Putative transcription factor C3H family |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68200.1 | 6e-72 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna03650.1-v1.0-hybrid |