PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02702.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 553aa    MW: 60614.4 Da    PI: 9.6115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02702.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05104126123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C+ C+k F r  nL+ H r H
  mrna02702.1-v1.0-hybrid 104 FICEVCNKGFQREQNLQLHRRGH 126
                              89*******************88 PP
2zf-C2H212.30.0005180202123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  +s+ k H + +
  mrna02702.1-v1.0-hybrid 180 WKCEKCSKRYAVQSDWKAHSKIC 202
                              58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-7103126No hitNo description
Gene3DG3DSA:3.30.160.606.1E-6103126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0052104126IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-5104126IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.99104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SMARTSM00355160145175IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-5168201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-7175200No hitNo description
SMARTSM00355130180200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRRERLERDQ RKRQKVHVRT SKAVGANPLI MMKGFAVDEN MSNLTCASGD LSASANSSIR  60
NDSSSSTHQQ QPAQKKKRNL PGNPDPDAEV IALSPKSLMA TNRFICEVCN KGFQREQNLQ  120
LHRRGHNLPW KLKQRTNKEV KKKVYLCPEP TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW  180
KCEKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAQENSNAAR  240
AINPLLSSSS LPQLHGGFQP HHHLSHHHVK REVQDLQLQL PPWMGGEAAT SAGPSHHLSS  300
NINLSSSSPL FSTSSFDQHQ SFLHQNPNPS SSDFQPSGAS AHMSATALLQ KASEMGATVS  360
KPSSMFLKPH DQQQQHQASH MMPETTAFSS FMEGNSGGPT NNSLLHDMMM MTSHMQQSSS  420
AAHGGFDQLS SSSSFGDQHH QGFNGSMVMG SFGENVNPPP QKKLITAEAQ LRRTGSTTDG  480
GGRGGGGGGG GMNEGMTRDF LGLRGFSSQD DQDFFDMAAA HGLDQHVVNS TSSANYNGQQ  540
HNNQNQTSWP GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33176234361Zinc finger protein JACKDAW
5b3h_F3e-33176234361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480488GGRGGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02702.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291048.10.0PREDICTED: protein indeterminate-domain 7-like isoform X1
TrEMBLA0A2P6Q1C50.0A0A2P6Q1C5_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004291048.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2