 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
mrna02646.1-v1.0-hybrid |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 254aa MW: 28408.8 Da PI: 7.8742 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna02646.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.9 | 7e-18 | 104 | 158 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq +Le+ F+++ +++ +++ eLA++l+L rqV vWFqNrRa+ k
mrna02646.1-v1.0-hybrid 104 RKKLRLTKEQSATLEDTFKQHTTLNPKQKLELARNLSLRPRQVEVWFQNRRARTK 158
78889************************************************98 PP
|
| 2 | HD-ZIP_I/II | 121 | 5.9e-39 | 104 | 191 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rl+keq+++LE++F+++++L+p++K elar+L l+prqv+vWFqnrRARtk+kq+E d+e Lkr++++lkeen+rL+ke +e
mrna02646.1-v1.0-hybrid 104 RKKLRLTKEQSATLEDTFKQHTTLNPKQKLELARNLSLRPRQVEVWFQNRRARTKLKQTEADCELLKRCCETLKEENRRLHKELQE 189
69************************************************************************************ PP
HD-ZIP_I/II 87 Lr 88
L+
mrna02646.1-v1.0-hybrid 190 LQ 191
98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MGLDELGLSL GCHDKAANHD RDHHHQNQKK PHLKFDQLLP SDLTLGPSDE AGPRGSNSSS 60
PSGAISSFSN SSSFKRVDRD IPGSGEEVER VSEELYEDQA GSPRKKLRLT KEQSATLEDT 120
FKQHTTLNPK QKLELARNLS LRPRQVEVWF QNRRARTKLK QTEADCELLK RCCETLKEEN 180
RRLHKELQEL QLMKQTPTAP FYMQFPTATL TVCPSCSERI VNGSSAVAGD DHHLGVSKPH 240
HLLNPFTHPS TAC*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 152 | 160 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
