PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02629.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 621aa    MW: 67710.2 Da    PI: 5.6363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02629.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47e-10461509355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  mrna02629.1-v1.0-hybrid 461 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 509
                              58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-16456526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.00E-11456513No hitNo description
PROSITE profilePS5088815.485458508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16459526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7461509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10464514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGNALLVQAA LLDKISNEPV IQRVSDAEEG LAPGGHINEE KQASSSSSFS DEMKADSSNS  60
LTTDRLRTVT SCLALKANYF PKAHHTPCTL TEMGTPVMLG RWMVEMGWDK DGVMMWMEDD  120
GVFILSLCVH GMLQPEASVA LTPSQVYKAA KLFPLLPFLV KALLYFQLFS LEWGIHLSPE  180
FQRFKLLNSK MGSHDNEDMG FQHRNEGSLN CPSSGMSTNP VPEKVSRMAM SSGSIFKPSN  240
APDPFFGSGW DPLVSLSQSD NFGGSSVASQ SEFTNPPYPI AMETQGMSST SHLVQYPSDS  300
SYVEMVPKLP CFGSGSFSEM VGSFGLPECA GISNPGCVAN YNPNRDGGMD RTSTMGAQSH  360
DDRQISEEGA LGSSPNGKRR KRVPESSPNK NAEGELNKDM SGESSDYLKE QDEKKTKLEE  420
NTAANLRGKQ AGKQTKDTSQ SGDAAKDSYI HVRARRGQAT NSHSLAERVR REKISERMRL  480
LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPEVNIDI ERILSKDIMN  540
SRNGSAAIFG FSPGMNSSHP YAHGMFQGTL PNMPSTAPQF PSMPQTVMDN ELQGLFHMGF  600
DSSSNIDSLG QNASRLKPEL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02629.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290997.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A2P6Q1500.0A0A2P6Q150_ROSCH; Putative transcription factor bHLH family
STRINGXP_004290997.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-88bHLH family protein