PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02614.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 159aa    MW: 18178.4 Da    PI: 8.8959
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02614.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.84e-1268119556
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                              ++ rr+ +NRe+ArrsR RKk  +e L+e++  L+ eN++Lk++l    +++
  mrna02614.1-v1.0-hybrid  68 RKRRRMTSNRESARRSRGRKKRHLEDLTEEANRLKMENRELKNRLGFVAEKC 119
                              5779999***********************************9998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-1264128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-1066117No hitNo description
PROSITE profilePS5021710.87566112IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-1168119No hitNo description
PfamPF001706.6E-1068120IPR004827Basic-leucine zipper domain
CDDcd147024.31E-1569120No hitNo description
PROSITE patternPS0003607186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MMSAACTSSP LFFTGADEPV QFQCPIQETE LIEELLSLLQ EGNSKSTSAS PNSGSDGSNR  60
GVYSVDERKR RRMTSNRESA RRSRGRKKRH LEDLTEEANR LKMENRELKN RLGFVAEKCH  120
VTWRENERLE AESLALWARL SHLNRVLFAM QTLQQSQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16771RKRRR
26988RRRMTSNRESARRSRGRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02614.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292766.11e-113PREDICTED: ocs element-binding factor 1
TrEMBLA0A2P6Q1291e-71A0A2P6Q129_ROSCH; Putative transcription factor bZIP family
STRINGXP_004292766.11e-113(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59963052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.14e-21basic leucine-zipper 5