PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02464.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 440aa    MW: 49187.7 Da    PI: 9.6001
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02464.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind72.39.5e-23231072102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+y ++ed++++ +isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SF       gF+kv +++         weF +++F+
  mrna02464.1-v1.0-hybrid  23 FLFKTYMLVEDPATDAVISWNEDGSAFVVWQPAEFARDLLPTLFKHSNFSSF-------GFRKVATSR---------WEFCNDKFR 92 
                              99*************************************************9.......9*****999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              kg+k++l++i+r+k 
  mrna02464.1-v1.0-hybrid  93 KGEKDHLCEIRRRKA 107
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-2415100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-2318105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-3819105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-92346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-1923105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-96173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEGVCDQKVL LEYVTRKSSP PPFLFKTYML VEDPATDAVI SWNEDGSAFV VWQPAEFARD  60
LLPTLFKHSN FSSFGFRKVA TSRWEFCNDK FRKGEKDHLC EIRRRKAWSN KQQPNQQGQA  120
AGGEDDQSDE RSSSTSSSSE YSSLIDENRR LKMENGVLSC ELTSMKNKCK ELLDLVAKNG  180
RDADQEEDDD QRPKLFGVRL ESGSEADICT ALKVLMSLCS PSYGSGEGAP PPQQTPAASP  240
TTFPPRRDAV SVFRRIMTSC LEEHLHKKLP ELECTLKESS KGRSSSPTHS TSILLEDISS  300
DENSKPKLLF TSVKKFAPAI VTQPQLGLRL PQMRRSRPRR LRLPHHRPQS SLARLPSPIS  360
DDHNAKKLST NPLRIETATA SPPEREKQLL LAVHSKTRLK AAKSNLEALV TKSTGVTEAS  420
SSSWCWTASA RRRRLRGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-13231054104Putative transcription factor
5d5x_B1e-13231054104Putative transcription factor
5d5x_E1e-13231054104Putative transcription factor
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02464.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-47heat shock transcription factor B3