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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
mrna02464.1-v1.0-hybrid |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
| Family |
HSF |
| Protein Properties |
Length: 440aa MW: 49187.7 Da PI: 9.6001 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna02464.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 72.3 | 9.5e-23 | 23 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
Fl k+y ++ed++++ +isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SF gF+kv +++ weF +++F+
mrna02464.1-v1.0-hybrid 23 FLFKTYMLVEDPATDAVISWNEDGSAFVVWQPAEFARDLLPTLFKHSNFSSF-------GFRKVATSR---------WEFCNDKFR 92
99*************************************************9.......9*****999.........********* PP
XXXXXXXXXXXXXXX CS
HSF_DNA-bind 88 kgkkellekikrkks 102
kg+k++l++i+r+k
mrna02464.1-v1.0-hybrid 93 KGEKDHLCEIRRRKA 107
************985 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046686 | Biological Process | response to cadmium ion |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MEGVCDQKVL LEYVTRKSSP PPFLFKTYML VEDPATDAVI SWNEDGSAFV VWQPAEFARD 60
LLPTLFKHSN FSSFGFRKVA TSRWEFCNDK FRKGEKDHLC EIRRRKAWSN KQQPNQQGQA 120
AGGEDDQSDE RSSSTSSSSE YSSLIDENRR LKMENGVLSC ELTSMKNKCK ELLDLVAKNG 180
RDADQEEDDD QRPKLFGVRL ESGSEADICT ALKVLMSLCS PSYGSGEGAP PPQQTPAASP 240
TTFPPRRDAV SVFRRIMTSC LEEHLHKKLP ELECTLKESS KGRSSSPTHS TSILLEDISS 300
DENSKPKLLF TSVKKFAPAI VTQPQLGLRL PQMRRSRPRR LRLPHHRPQS SLARLPSPIS 360
DDHNAKKLST NPLRIETATA SPPEREKQLL LAVHSKTRLK AAKSNLEALV TKSTGVTEAS 420
SSSWCWTASA RRRRLRGCR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5d5w_B | 1e-13 | 23 | 105 | 4 | 104 | Putative transcription factor |
| 5d5x_B | 1e-13 | 23 | 105 | 4 | 104 | Putative transcription factor |
| 5d5x_E | 1e-13 | 23 | 105 | 4 | 104 | Putative transcription factor |
