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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
mrna02402.1-v1.0-hybrid |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
LSD |
Protein Properties |
Length: 126aa MW: 13684.5 Da PI: 5.5113 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
mrna02402.1-v1.0-hybrid | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 42.8 | 8.4e-14 | 36 | 60 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Cr lL YP+GA++V+C++C+tV
mrna02402.1-v1.0-hybrid 36 CGSCRRLLTYPPGAKHVQCSCCQTV 60
************************9 PP
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2 | zf-LSD1 | 45.3 | 1.4e-14 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C +C tlL+YP+GApsVRC++C +V
mrna02402.1-v1.0-hybrid 74 CDSCTTLLMYPYGAPSVRCSSCSFV 98
**********************988 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 126 aa
Download sequence Send
to blast |
METEEQQVDE APPQETQPVV SQPPPPPISE IAQMVCGSCR RLLTYPPGAK HVQCSCCQTV 60 NFVLEAHQVG QVKCDSCTTL LMYPYGAPSV RCSSCSFVTE VKDHNMRPPW SVQQGQPTAP 120 SNSVH*
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |