 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
mrna02109.1-v1.0-hybrid |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
| Family |
C2H2 |
| Protein Properties |
Length: 466aa MW: 53395.4 Da PI: 8.049 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna02109.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 20.8 | 1e-06 | 61 | 82 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ Cg sF+ + +Lk+H+ +H
mrna02109.1-v1.0-hybrid 61 TCEECGASFKKPAYLKQHMLSH 82
6*******************99 PP
|
| 2 | zf-C2H2 | 16.8 | 2e-05 | 192 | 216 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y+C+ dC +++rk++L+rH+ H
mrna02109.1-v1.0-hybrid 192 YVCTidDCRSTYRRKDHLNRHLLQH 216
99*******************9887 PP
|
| 3 | zf-C2H2 | 13.5 | 0.00021 | 261 | 285 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ Cgk+F s L++H +H
mrna02109.1-v1.0-hybrid 261 HVCQepGCGKVFQFASKLRKHEDSH 285
689999***************9888 PP
|
| 4 | zf-C2H2 | 13.6 | 0.00019 | 352 | 376 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23
kC+ C +F+ ksnL rH + H
mrna02109.1-v1.0-hybrid 352 KCEyeGCLHTFTKKSNLLRHVKAvH 376
79999***************99877 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 1.65E-5 | 17 | 82 | No hit | No description |
| SMART | SM00355 | 43 | 19 | 42 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 58 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 11.448 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0088 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.9E-7 | 180 | 218 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.7E-9 | 188 | 218 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 9.577 | 192 | 219 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0054 | 192 | 216 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 194 | 216 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.827 | 221 | 251 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 1.2 | 221 | 246 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 2.9E-8 | 256 | 285 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 8.83E-5 | 257 | 286 | No hit | No description |
| PROSITE profile | PS50157 | 10.097 | 261 | 290 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.035 | 261 | 285 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 263 | 285 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 1.2 | 293 | 318 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 295 | 318 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 14 | 321 | 342 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 12.133 | 351 | 381 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0072 | 351 | 376 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 3.7E-5 | 352 | 378 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 353 | 376 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 6.75E-8 | 361 | 404 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 379 | 403 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 9.141 | 382 | 413 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 3.7 | 382 | 408 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 384 | 408 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MEKGEAEEKR PIFRDIRRYY CEYCGICRSK KTLIASHKLA QHKDEMELAK GDEVEVDKSN 60
TCEECGASFK KPAYLKQHML SHSLEESACL RTIPFGSREA LDPTKELQNA RGYELEWTST 120
RGETSCEAPS SDPQSRSVRI RTSEKYCFDG VKHWIPNKEL QNARGFSLSG LVPGGRPPVK 180
LHQVTLNHTR PYVCTIDDCR STYRRKDHLN RHLLQHQGKI FKCPIENCKS EFAFQGNVKR 240
HVVEFHSEDC PSTGVEGQKQ HVCQEPGCGK VFQFASKLRK HEDSHVKLDS VEAFCSEPDC 300
MKYFSNKQCL QEHIQSCHTH IACEICGKKV WKKNIRSHLS THEEGASSLE IKCEYEGCLH 360
TFTKKSNLLR HVKAVHLQQK PYACSFSGCG KTFSYKHVRD KHENSGCHGD FEEADEQFRS 420
RPRGGCKRIC PTVEMLVRKR VTPPDQFGPE TEFLSQLFSQ EEDER*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
