PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna01828.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 770aa MW: 83546.7 Da PI: 5.5769 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95 | 6.9e-30 | 91 | 175 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++le mrna01828.1-v1.0-hybrid 91 RWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELE 174 8*********************************************************************866665..******98 PP trihelix 87 a 87 a mrna01828.1-v1.0-hybrid 175 A 175 5 PP | |||||||
2 | trihelix | 105.8 | 3.1e-33 | 497 | 582 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++r+pk+Ckekwen+nk++kk+ke++k r +e+ +tcpyf++l+ mrna01828.1-v1.0-hybrid 497 RWPKAEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYKRNPKRCKEKWENINKYFKKVKESNKVR-PEDAKTCPYFHELD 581 8********************************************************************97.99999********8 PP trihelix 87 a 87 a mrna01828.1-v1.0-hybrid 582 A 582 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0062 | 88 | 150 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.586 | 90 | 148 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.33E-28 | 90 | 155 | No hit | No description |
Pfam | PF13837 | 4.2E-21 | 90 | 176 | No hit | No description |
PROSITE profile | PS50090 | 6.946 | 490 | 554 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0065 | 494 | 556 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.62E-30 | 496 | 561 | No hit | No description |
Pfam | PF13837 | 4.2E-23 | 496 | 583 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 770 aa Download sequence Send to blast |
MQGGGGGTQS HYGVVVSSAA EASTAAAPSM AAEAADQAHV VEEASPISSR PPAGGAISAV 60 NLDELMTLSG AAADVAADQG GGGGGGSGGN RWPRQETLAL LKIRSEMDVA FRDATLKGPL 120 WEDVSRKLAE LGYKRNAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF SELEALHGSP 180 SPNVSASPPV HVTTAAAAPV SIGFGSISNP MPISSFRMTG GNTSTVPIMS TQATGAIPIM 240 PSSQPPLPAS TAAPMDINFS SNSSSSSHGE DEDYEDDDEV AGEPPANTSR KRKRGTSSRE 300 SGGSTRRMME FFEILMKQVM QKQETMQQRF LEVIEKREQD RNIREEAWKR QEMARLTREH 360 ELMTQERAIS ASRDAAIIAF LQKITGQTIQ LPPPLNVHNA PPPPVPPSVS VHVTPVSAPP 420 PPLAQQQSLH QVHQHQPQQQ TPPTQISRHQ IRTSIPPTPS ANQTEVVMAV PEQQVAQSQE 480 IVVGSGGGFE ATTSSSRWPK AEVLALIKLR SGLETRYQEA GPKGPLWEEI SAGMQRMGYK 540 RNPKRCKEKW ENINKYFKKV KESNKVRPED AKTCPYFHEL DALYRKRILG GGPSGGSSSS 600 LGNQTVQQQP QQAPPQPKLD SAAQGTVANT QQTQGTVAAT DQSVNKSGDD SPNLQKNLFG 660 DAPEEAAKKP EDIVKELMGQ QQQHHHQVLN QQGVQQQLVV EDYDRVEEGD SDVNLDQDEE 720 EDEEDEEDEE MDDESRKMDY KIEFQKQQNT GPSSNGGGNG APSFLAMVQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 133 | 141 | KRNAKKCKE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna01828.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309494.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A2H4NFV4 | 0.0 | A0A2H4NFV4_FRAAN; Trihelix transcription factor GT-2F | ||||
STRING | XP_004309494.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-48 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna01828.1-v1.0-hybrid |