PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01558.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 1630aa    MW: 176824 Da    PI: 4.3468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01558.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.3e-0616041627226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                               k + Cr ++++G+Ck G+ C + H+
  mrna01558.1-v1.0-hybrid 1604 KGRVCR-YYESGHCKKGAACDYLHP 1627
                               7789**.8899*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.31E-8406465IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.2E-9414473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.502421477IPR019787Zinc finger, PHD-finger
CDDcd155689.76E-19423465No hitNo description
SMARTSM002497.4E-4423475IPR001965Zinc finger, PHD-type
Gene3DG3DSA:1.10.245.101.3E-26604688IPR003121SWIB/MDM2 domain
SuperFamilySSF475926.1E-21605682IPR003121SWIB/MDM2 domain
PfamPF022012.5E-15607680IPR003121SWIB/MDM2 domain
SMARTSM001512.8E-4607685IPR019835SWIB domain
PROSITE profilePS5136028.722737870IPR004343Plus-3 domain
SMARTSM007194.2E-49737847IPR004343Plus-3 domain
SuperFamilySSF1590422.75E-33738866IPR004343Plus-3 domain
PfamPF031262.5E-23742845IPR004343Plus-3 domain
SuperFamilySSF552774.71E-1810981159IPR003169GYF domain
CDDcd000725.90E-1711071160No hitNo description
PROSITE profilePS5082915.81911071161IPR003169GYF domain
SMARTSM004445.0E-2011081163IPR003169GYF domain
PfamPF022131.2E-1511091153IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.9E-1811091160IPR003169GYF domain
PROSITE profilePS5010315.11216021629IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-516021628IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-516021627IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-516031627IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1630 aa     Download sequence    Send to blast
MAAEAERDEV EAERVERTEV EAEVVGAGGG EVELETKEEE VKLKGEGAEL EKPEVELERE  60
EIKEEVEEKA EDVVDETIKT EAEADMADQT LETSDAADVK DTLEAGDAAE EGKGNEAEGH  120
EANVTDGVEK SNGTEEAVEE DVDEGKEAIV TDKVEEAVET EAVEEGKEAA AEGLEANVTV  180
TEMSDEMVVE SAEAVEEEKK VSEEEGDEAD GKELVQESVE TEVVGEEGLE VEVEGHEANV  240
TMEVVQESAE TEVAREEGHE AEAEGHEANV TMEAEEALEV GQEGEADGDE QDLNVKEVVD  300
YPIETRVSGE EELDAEVEGH ELNATVSTAA VEEADVGDDV MEETTEAEET EAAGEGAEEM  360
EADEMEGADG AEEMEADEIE AAGEEEAEET NTASLGGKRK RRKNSKAAVA SEKVLLKKKE  420
EDVCFICFDG GELVLCDRRG CPKAYHPSCV NRDEAFFRSK GRWNCGNKGF CETCMKTVML  480
IEKNEHGNKD KEAVDFDDKS SWEYLFKDYW IDLKERLSLT LNDLAQAKNP WKGSAGHANK  540
LGSHDEPYDA NNDGGSDSDN SENLDSTNSK RRKGKKRLKT RAKGKNSSSP ATGSGGQSAD  600
DNTDWASKEL LEFVMHMRNG DSSALSQFDV QALLLEYIKR NKLRDPRRKS QIICDLRLQS  660
LFGKPRVGHF EMLKLLESHF FMKEDSQIDD LQGSVVDTEG NQLEADGNSD TPTKASKDKK  720
RKRKKGEPQS NVEDFAAIDI HNISLIYLRR NLVEDLLEDM DNFQEKVAGS FVRIRISGSG  780
QKQDLYRLVQ VIGTCKAAEP YKVGKRMTDT LLEILNLNKT EIVTIDIISN QDFTEDECKR  840
LRQSIKCGLI NRLTVGDIQE KAVVLQPVRV KDAIFLCVWE IDLSRGNLFD ISAITICSTP  900
KLWLETETVR LQHLRDRASE KGQCVEKLQL LKTPEERQRR LEETLEIHAD PNMDPSYESE  960
EDEDEGGDQR QDSYTRPTGS GFGRKGREPI SPRRGGSSLN DSWSGSRNFS NMNRDFGRSM  1020
SSKGIFNKVE NSTGAGDIVN DTWGQGRETP QTNHWENKQN ISSLETGSRN TQSVVPSEAL  1080
PAGAPENRGA PLSLGVAQSG ANINETEKIW HYQDPSGKVQ GPFSMIQLRK WNNTGYFPPN  1140
LRVWKNTDTQ EDSILVTDAL VGKFQKDPSI PKAQMVHDSH LMPAISGKAQ GAQLQQTSES  1200
QGGSWGAHEI NSSTGRGTPS SVEVPKYSSD GWGTTNFPSP TPSQTPITGA KRQAYENNWS  1260
ASPGGNAVVQ SHAVLTPERA MRVSGNDHST SLPGMTATPN SLQMHGQVNV SGPVLVNASM  1320
KPLPDVQNIV SNLQNLVQSV TSRTTASDTR AWGSGTVPGS ESQPWGGAPS QKIEPNNATN  1380
VPAQLPAHGY WPPTNNGTSS VNTGSSAGNF PAQGLSGVPN SDAWRPPVPS NQSYIQPPAQ  1440
PQAPWGSSVP DNQSAVPRMG QESQNSGWGP VAGNSNVAWG GPVPGNTNMN WVPPSQGPGW  1500
SASGQGPVRG NAVPSWAPPP GQGPPSVSAN PGWAPPGQGP ALGNPNSGWS APTANQTQNG  1560
DRFSNQRDRA SHGGDSGFGG GKPWNRQQSF GGGGGGGSSR PPFKGRVCRY YESGHCKKGA  1620
ACDYLHPDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397402KRKRRK
2718723KKRKRK
3718724KKRKRKK
4720724RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01558.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292436.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X1
TrEMBLA0A2P6PPY20.0A0A2P6PPY2_ROSCH; Putative chromatin regulator PHD family
STRINGXP_004292436.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding