PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01356.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 711aa    MW: 78810 Da    PI: 6.1788
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01356.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.22.4e-1333457091374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklf 84 
                              lv+lLl+cAeav+++d  la+++L +l++ +s  gd+mqR+aa+fteAL+arla + ++ ++al+p++ s+    s e l+++++ 
  mrna01356.1-v1.0-hybrid 345 LVHLLLACAEAVAKEDYMLARRYLHHLNQVVSALGDSMQRVAACFTEALSARLAATLTTNSSALAPKPFSPFPpnSLEILKIYQIV 430
                              68*****************************************************99999999999988865455*********** PP

                     GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                              ++++P++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+      e+++etg+ L ++A 
  mrna01356.1-v1.0-hybrid 431 YQACPYIKFAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGP----CIEAVKETGRCLMELAI 512
                              *****************************************************************....***************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +l+vpfef++ v ++ledl++++++ + gEalaVn v +lhr++    +l     ++L ++++  P++v++veqea+hn++ Fl r
  mrna01356.1-v1.0-hybrid 513 SLHVPFEFHA-VGEQLEDLKPHMFNRRIGEALAVNTVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTLVEQEASHNGPYFLGR 591
                              **********.7*******************************9..44444....5****************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              fleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+va egaer+erhe+lekWr+ +e  GFk+vpls +a++q k ll 
  mrna01356.1-v1.0-hybrid 592 FLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVAFEGAERTERHERLEKWRKVMEGKGFKSVPLSANAVTQSKILLG 677
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  mrna01356.1-v1.0-hybrid 678 LYSCDGYRMMEDKGCLLLGWQDRSIMAASAWR 709
                              *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.124319689IPR005202Transcription factor GRAS
PfamPF035148.3E-131345709IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MMMNSHCGSM GSIKSENSCT DFKPTSPNES TIMSEAPKKA TSTTTTALSS SDMMEQSTTS  60
LTPPSLNFPA LKFELDGDVE VESPDHSMWE SFFSEQFDTD FMVLSPVANM NNNLPNSPRS  120
FCYNNGQVMQ GQSSFSSCSP PRFGSSPVGA FSRDNSKGKG LSPLRRVFNS PVNYIQQEPE  180
NLQSLPPASI EDFLDDYQRD GFVAAYGNPN LNNQTTTCTS KMSAGVNNPS SQSYHNPMTS  240
MDCNMSSTMQ TPSRFSRSVS ETSLVTECNS QMSQESRGGG AYHHQMGSNC GAPLSQQLMH  300
ERQQEKQHMQ MHPQKQHHNN HNYNMMPPSL PPVAPEPEQD SGLQLVHLLL ACAEAVAKED  360
YMLARRYLHH LNQVVSALGD SMQRVAACFT EALSARLAAT LTTNSSALAP KPFSPFPPNS  420
LEILKIYQIV YQACPYIKFA HFTANQAIFE AFESEERVHV IDLDILQGYQ WPAFMQALAA  480
RSGGAPFLRI TGVGPCIEAV KETGRCLMEL AISLHVPFEF HAVGEQLEDL KPHMFNRRIG  540
EALAVNTVNR LHRVPGNCLG NLLAMIRDQA PNIVTLVEQE ASHNGPYFLG RFLEALHYYS  600
AIFDSLDATF PPDSAQRAKV EQYIFAPEIR NIVAFEGAER TERHERLEKW RKVMEGKGFK  660
SVPLSANAVT QSKILLGLYS CDGYRMMEDK GCLLLGWQDR SIMAASAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-9535270826378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01356.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304540.20.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2P6S6K00.0A0A2P6S6K0_ROSCH; Putative transcription factor GRAS family
STRINGXP_004304540.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-94RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]