PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 419aa MW: 45499.8 Da PI: 10.1077

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna01346.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.7	1.1e-34	80	290	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i++ tgt++++as+ a+ s+s++ ss+ mrna01346.1-v1.0-hybrid 80 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIATTGTGTIPASALAAAGGSVSQQGSSI 165 789******************************************************************99966666666666666 PP TCP 88 g..................................................................................... 88 + mrna01346.1-v1.0-hybrid 166 Saglyqktddlgssggrtswamvggnlgrphvaaatglwppagfgfssqssssgpsttnlggtesssnylqkiglpgfdlpvtnmg 251 66777666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP TCP 89 ......................................k 89 mrna01346.1-v1.0-hybrid 252 pmsftsilgggsqqlpglelglsqdghlgvlnsqayqiY 290 666666666666666666666666666666666666551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-30	85	321	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.257	86	140	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDPKASKQPQ EIPSFLSLPQ PQQQQQQHQQ HHQQLPNTMS ENNNNNNHNH NNNNNVVKPA 60 EIKDFQIVVA DKDETKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI FQLTRELGHK 120 SDGETIQWLL QQAEPSIIAT TGTGTIPASA LAAAGGSVSQ QGSSISAGLY QKTDDLGSSG 180 GRTSWAMVGG NLGRPHVAAA TGLWPPAGFG FSSQSSSSGP STTNLGGTES SSNYLQKIGL 240 PGFDLPVTNM GPMSFTSILG GGSQQLPGLE LGLSQDGHLG VLNSQAYQIY QQMGHARVHH 300 HQQQQQQHHQ QQHQHQQQQQ APSSKDDSQG SGQWELCTVK QMVWVLGLTA ALIQRCVDYS 360 KRSKADICTR LKVRTSLCSA PYDADEGAPL PQRTPAASPT TFPPRRVRRI PVFRRGPL*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDPKASKQPQ EIPSFLSLPQ PQQQQQQHQQ HHQQLPNTMS ENNNNNNHNH NNNNNVVKPA  60
EIKDFQIVVA DKDETKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI FQLTRELGHK  120
SDGETIQWLL QQAEPSIIAT TGTGTIPASA LAAAGGSVSQ QGSSISAGLY QKTDDLGSSG  180
GRTSWAMVGG NLGRPHVAAA TGLWPPAGFG FSSQSSSSGP STTNLGGTES SSNYLQKIGL  240
PGFDLPVTNM GPMSFTSILG GGSQQLPGLE LGLSQDGHLG VLNSQAYQIY QQMGHARVHH  300
HQQQQQQHHQ QQHQHQQQQQ APSSKDDSQG SGQWELCTVK QMVWVLGLTA ALIQRCVDYS  360
KRSKADICTR LKVRTSLCSA PYDADEGAPL PQRTPAASPT TFPPRRVRRI PVFRRGPL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna01346.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG934836	0.0	HG934836.1 Rosa hybrid cultivar microsatellite DNA locus WGR17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468196.1	0.0	PREDICTED: transcription factor TCP20
Swissprot	Q9LSD5	2e-75	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A1Q1NA40	0.0	A0A1Q1NA40_FRAVE; PCF transcription factor 17
STRING	XP_004304531.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	9e-57	TCP family protein

Link Out ? help Back to Top
Phytozome	mrna01346.1-v1.0-hybrid

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]