PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00274.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 327aa    MW: 35208.7 Da    PI: 5.5925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00274.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011136158123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC+ C + Fs++  L  H++ H
  mrna00274.1-v1.0-hybrid 136 FKCNFCQRKFSTSQALGGHQNAH 158
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-5134162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.74E-6134163No hitNo description
PROSITE profilePS5015711.759136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEKQEDAVEA CPLEAPAASE VPPSPPSNSL ESKEDGDGDD KSNMKMKEKV IVLIDDSQQS  60
PEKEKETEAV VGGSTSSSLL LHMAPSNPES NIELALFNSS LSQQVPYNGE EVVEVEESSD  120
ENPGEGDNKK KELRVFKCNF CQRKFSTSQA LGGHQNAHKQ ERQLAKRRNH AYEMGGGLGH  180
SSHFPYYSSP YSSFSTHSLY GSYNRSSLGV RTDSLIHKPS YTPWSSTYGR FGLGLGGWSR  240
PSSNLINPID QHRIALQGLQ NNINGLGLAG RTATAPSASG LHSFGGSNLS GVNNRVPPTS  300
DDSTLRRAEP PTCDTDIAGL DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00274.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470461.10.0PREDICTED: uncharacterized protein LOC105353205
TrEMBLA0A2P6SAW61e-143A0A2P6SAW6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_008231613.15e-60(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-18zinc-finger protein 1