PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna00274.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 327aa MW: 35208.7 Da PI: 5.5925 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C + Fs++ L H++ H mrna00274.1-v1.0-hybrid 136 FKCNFCQRKFSTSQALGGHQNAH 158 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-5 | 134 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.74E-6 | 134 | 163 | No hit | No description |
PROSITE profile | PS50157 | 11.759 | 136 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MEKQEDAVEA CPLEAPAASE VPPSPPSNSL ESKEDGDGDD KSNMKMKEKV IVLIDDSQQS 60 PEKEKETEAV VGGSTSSSLL LHMAPSNPES NIELALFNSS LSQQVPYNGE EVVEVEESSD 120 ENPGEGDNKK KELRVFKCNF CQRKFSTSQA LGGHQNAHKQ ERQLAKRRNH AYEMGGGLGH 180 SSHFPYYSSP YSSFSTHSLY GSYNRSSLGV RTDSLIHKPS YTPWSSTYGR FGLGLGGWSR 240 PSSNLINPID QHRIALQGLQ NNINGLGLAG RTATAPSASG LHSFGGSNLS GVNNRVPPTS 300 DDSTLRRAEP PTCDTDIAGL DLSLKL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna00274.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470461.1 | 0.0 | PREDICTED: uncharacterized protein LOC105353205 | ||||
TrEMBL | A0A2P6SAW6 | 1e-143 | A0A2P6SAW6_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_008231613.1 | 5e-60 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80730.1 | 2e-18 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna00274.1-v1.0-hybrid |