PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_84.g489.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

Protein Properties

Length: 248aa MW: 28192.7 Da PI: 9.0214

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_84.g489.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	60.3	4.8e-19	17	88	4	77
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 v C+ ++e + y+rr++ C++++ + v+++g+ qrfCqqC+++ ++ fD + r+Cr La+h errr ++ model.Picochlorum_contig_84.g489.t1 17 V--CDCLVNEDRPYYRRYRTCRACACRERVMLRGIPQRFCQQCGKYEPVESFDVGTRTCRVALARHAERRRLQS 88 4..555678999**********************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.8E-15	11	74	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	17.76	12	87	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-16	14	89	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-17	16	86	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGGNQTAWKN KPIHCVVCDC LVNEDRPYYR RYRTCRACAC RERVMLRGIP QRFCQQCGKY 60 EPVESFDVGT RTCRVALARH AERRRLQSEK KRQQSKSDGQ ETSRKRHANM FYPKPLHVAS 120 PNLAEASLAE EKRTSIFACA KAESIKYGTI QRISEGNEIS PSQVLGTLHG IIRSYFYPPR 180 NGERNGNNSL STDSTESSES TEDTEDQVRQ LVRARHAISD EDMQQVVEIL NWCLAAKGEN 240 KRPNPQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	2e-11	18	85	11	78	squamosa promoter binding protein-like 7

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-09	SBP family protein