PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_82.g404.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 741aa    MW: 78229.9 Da    PI: 10.165
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_82.g404.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-143175147
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                         r rWT+ E++l+++a + +G   W++I ++++ +++  q++s+ qk+
  model.Picochlorum_contig_82.g404.t1 31 RERWTEKEHDLFLEALRIHGRQ-WRKIEAYIQ-TKSSVQIRSHAQKF 75
                                         78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-82583IPR009057Homeodomain-like
SuperFamilySSF466893.74E-142581IPR009057Homeodomain-like
PROSITE profilePS5129419.8592680IPR017930Myb domain
TIGRFAMsTIGR015573.4E-142978IPR006447Myb domain, plants
SMARTSM007172.7E-113078IPR001005SANT/Myb domain
PfamPF002496.2E-123174IPR001005SANT/Myb domain
CDDcd001672.99E-83376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MAPQQAGGQV AEESPHGSKP RRKQYTMTKP RERWTEKEHD LFLEALRIHG RQWRKIEAYI  60
QTKSSVQIRS HAQKFFNKVE KQKELLKAGL PLMQSQFKIP LDIDVPPPRP RKTIDPPTQP  120
ETNHKKDAIN GDGSLRLMAE YAVAMKNGGI SQDVTVAAVA AAAAAAAAAA AAAVVSAAGK  180
EIEEKFQSDP PAVFPFFGAS PSMLRALNNP AQIHAAMQAS LANHNLSVPT GNSQKPGKTQ  240
YDTSTQLQTS ARKSKNRVKE RTERTGTSEP GVMQTNIQFH GEDGEGSACS REDAPSKLGL  300
SDEDDANLVL PAKDGGKNQN SSGNSSLARL LHPPIGSMGQ GAQQTSGAAF IAPSAGWTSQ  360
YSDPNVSALW HQYYNPGDAV TAQQPPPSSV QNNGKRRGAT QNTRKDGETI IRANGGERGS  420
KTSNLKQVVP EGSGSNPTGN GSSGNDSVHP TTQNRTTNGI EGLGTNGNGS SGNEEHHAEG  480
KQKNGALGRQ RAPALKSVRI DGSSDGNGSD EGVQNGSGDG SNQGAKNGSG GGSNEGEKNG  540
SGDGSNDANG SNEKASDEKQ AQLPRLPDAK QFKPPVPQAE NQGVDRVSLQ TIHNRAVNTA  600
FQALQSAGFN ALLAGHVWPG QAGYQIPFGP WQNSLSGAGV ESLTAYQVSQ FTNAHGMSVQ  660
AWGPIEDKRD LGKVHTMRNP PGHKPAHLDS RRATSSGRLN KDASTSGEGR SSPSKRKSSS  720
QKEGTRGGRK KARPVPSDDH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823KPRRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.46e-25MYB_related family protein