 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
model.Picochlorum_contig_82.g332.t1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
|
Family |
SBP |
Protein Properties |
Length: 355aa MW: 40074.2 Da PI: 7.8506 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
model.Picochlorum_contig_82.g332.t1 | genome | Rutgers | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 95.1 | 6.9e-30 | 92 | 167 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75
C+vegCe+ +s+ y+rr+k+C++h k++ +v+g++qrfCqqC++fhe+++fD +kr Cr L +hn+rr+k
model.Picochlorum_contig_82.g332.t1 92 CHVEGCETVMSDETAYFRRYKICRKHLKSNYLIVAGIQQRFCQQCGKFHEVEKFDGTKRNCRATLVRHNRRRKK 165
*************************************************************************9 PP
-- CS
SBP 76 kq 77
++
model.Picochlorum_contig_82.g332.t1 166 TS 167
86 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MTSPDMMHMK HEEAYLVDPT PPSSDAAVVR ADDRREDENV DSEDDTTERD SEDNNMQKDS 60 KDPAPVDGVS GTIILPMQGS EFRRNDKGDV LCHVEGCETV MSDETAYFRR YKICRKHLKS 120 NYLIVAGIQQ RFCQQCGKFH EVEKFDGTKR NCRATLVRHN RRRKKTSRAK RKKSASEDED 180 SGTKQPNVTW EHPGMGAMLN SSPVNVDILK AYYGVPNPND AFPPELVNTI AELERLIGRE 240 VIHHCLQSSQ PPQMWQQNGY ATNNIFQGNG MHRYSPAPVH QSPPMMNVFQ QYGIPRSAPQ 300 HPYTSGGMPM PPPSARKQVP KGASDSMMDQ TASDILMRMK NSMPPKSQYM RMPM*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ul4_A | 1e-19 | 91 | 165 | 10 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 160 | 172 | RRRKKTSRAKRKK |