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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_81.g308.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | SBP | ||||||||
Protein Properties | Length: 639aa MW: 70996 Da PI: 6.8652 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75 | 1.3e-23 | 65 | 138 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 Cqv gC++ + +y++++++Ce h+k+p+v+++g+ rfCq+C+rf +l fD e+rsCr L++hn+rrr+ model.Picochlorum_contig_81.g308.t1 65 CQVVGCTNVCE--SSYYKKYRICEEHAKSPAVCIDGEAMRFCQKCARFQSLFSFDAEHRSCRVSLEHHNRRRRQ 136 ******97654..47**********************************************************8 PP -- CS SBP 76 kq 77 ++ model.Picochlorum_contig_81.g308.t1 137 AK 138 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.0E-20 | 59 | 124 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 21.35 | 62 | 137 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.1E-20 | 63 | 138 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-22 | 65 | 136 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence Send to blast |
MAGGNHWRSQ EYAWSPETLV AKRVSERKQA ESSKRGDDAR HVFPEGGVCH KKASRRRAKG 60 APISCQVVGC TNVCESSYYK KYRICEEHAK SPAVCIDGEA MRFCQKCARF QSLFSFDAEH 120 RSCRVSLEHH NRRRRQAKGR SRGKSKAVAK SAVAAVFSEH ELMHLNCVSN GPSQTERSTP 180 SHEDTQSADD AYLSLMKADG SMDVDEYSPE YKEMHLSIKF QEGTPSDLPE SLYDDLLLEV 240 PAVADVVGAI RPGCTHLTTS IRIPAEVHAE FMSSTKPYDM ARRLHKKWFQ SKSLSKGFEV 300 QIEQHATQVT SDGSHVMDRH ALPSPLSLFP CCVSSTKDAC LVDVLGHDIK DSKFVAMCRQ 360 NGRYLTTTML MDESWNDSVF KHVPRSHTSD DETSHGGDSL GSSLESRGSS SICVTDGFDK 420 YDQSDLGSDT SDVNEERNHT EKRSIKIIGL QDGVCEIELV HENSSTPPLA LLILPDPDAV 480 EELQNKITSH QHKPWAQAFL RDVGFVTHHL HGEVPCSMEK MSLVRRAADN LISYSWENGF 540 CALANFLETS IAKHGFPEDT DLLTTKSHKN AISVREVSYS RGLEYVKLAD AKVLLEKIIK 600 LTGITRQPID SGWKGLEHQL IYGSGMLMIA ILVYAASS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-12 | 65 | 136 | 11 | 84 | squamosa promoter binding protein-like 4 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 3e-15 | squamosa promoter binding protein-like 10 |