PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_69.g564.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 379aa    MW: 42226.4 Da    PI: 9.9211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_69.g564.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-15447246
                                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                         + WT eEde+l  +v++ G + W+ Iar+m  ++t+kqc+ rw +
  model.Picochlorum_contig_69.g564.t1  4 LVWTREEDEKLRGLVRRIGENKWADIAREME-TKTGKQCRRRWKN 47
                                         68*****************************.***********98 PP
2Myb_DNA-binding46.49e-155796344
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                                          W++eEd++l++++k+lG++ W+ I+r++g  Rt++  k+rw
  model.Picochlorum_contig_69.g564.t1 57 TWSEEEDQKLIRYHKELGNK-WTEISRRFG-DRTDNAAKNRW 96
                                         7*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.255153IPR017930Myb domain
SMARTSM007173.3E-11251IPR001005SANT/Myb domain
SuperFamilySSF466896.44E-26496IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-15649IPR009057Homeodomain-like
PfamPF139212.9E-16666No hitNo description
CDDcd001674.90E-14647No hitNo description
Gene3DG3DSA:1.10.10.607.1E-1750102IPR009057Homeodomain-like
SMARTSM007171.7E-1254102IPR001005SANT/Myb domain
PROSITE profilePS5129416.84854104IPR017930Myb domain
CDDcd001671.01E-115796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MPTLVWTREE DEKLRGLVRR IGENKWADIA REMETKTGKQ CRRRWKNALT INAKTTTWSE  60
EEDQKLIRYH KELGNKWTEI SRRFGDRTDN AAKNRWSALC RKHPSLVHDA APVTLVGVKR  120
GTRTHTMIEA SSSERSSVRQ RREPAMQTRD QTHVGAGVPT LDGGSSLPTP FDQRSTDDLS  180
AGPADMLRRH IDPLLPKDSR YHNLFKAGQM SHSSLDNTKS TGVNTSHSIF PKDILEASDV  240
MRQYLSSWPL GAPRMTGTPS QQMAMGDFYS LLQSASQNLL PPGGFSSSNS KRMMMGNGNS  300
SDILDLSFTS ASSSLNSEQR QILETLLNQQ SKSGVEISPP VQIPVGKPSE DLVQLVSNFS  360
QSEIESLISF LKGNEQKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2561027103MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-2661027103C-Myb DNA-Binding Domain
1msf_C9e-2661027103C-Myb DNA-Binding Domain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-27myb domain protein 98